Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   D2E16_RS00415 Genome accession   NZ_CP032064
Coordinates   80117..80587 (+) Length   156 a.a.
NCBI ID   WP_192369297.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 75117..85587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS00380 (D2E16_00400) cinA 75152..76333 (+) 1182 WP_192369292.1 competence/damage-inducible protein A Machinery gene
  D2E16_RS00385 (D2E16_00405) recA 76385..77536 (+) 1152 WP_192369293.1 recombinase RecA Machinery gene
  D2E16_RS00390 (D2E16_00410) spx 77695..78093 (+) 399 WP_105108276.1 transcriptional regulator Spx -
  D2E16_RS00395 (D2E16_00415) - 78199..78465 (+) 267 WP_105108277.1 IreB family regulatory phosphoprotein -
  D2E16_RS00400 (D2E16_00420) ruvX 78465..78884 (+) 420 WP_192369294.1 Holliday junction resolvase RuvX -
  D2E16_RS00405 (D2E16_00425) - 78896..79213 (+) 318 WP_192369295.1 DUF1292 domain-containing protein -
  D2E16_RS00410 (D2E16_00430) - 79467..80027 (+) 561 WP_192369296.1 nucleotidyltransferase family protein -
  D2E16_RS00415 (D2E16_00435) comX/sigX 80117..80587 (+) 471 WP_192369297.1 sigma-70 family RNA polymerase sigma factor Regulator
  D2E16_RS00420 (D2E16_00440) rpsJ 80854..81162 (+) 309 WP_014735259.1 30S ribosomal protein S10 -
  D2E16_RS00425 (D2E16_00445) rplC 81259..81885 (+) 627 WP_011921686.1 50S ribosomal protein L3 -
  D2E16_RS00430 (D2E16_00450) rplD 81910..82533 (+) 624 WP_004195490.1 50S ribosomal protein L4 -
  D2E16_RS00435 (D2E16_00455) - 82533..82832 (+) 300 WP_004195491.1 50S ribosomal protein L23 -
  D2E16_RS00440 (D2E16_00460) rplB 82850..83683 (+) 834 WP_002936663.1 50S ribosomal protein L2 -
  D2E16_RS00445 (D2E16_00465) rpsS 83935..84216 (+) 282 WP_000533766.1 30S ribosomal protein S19 -
  D2E16_RS00450 (D2E16_00470) rplV 84234..84578 (+) 345 WP_002936662.1 50S ribosomal protein L22 -
  D2E16_RS00455 (D2E16_00475) rpsC 84591..85244 (+) 654 WP_002936661.1 30S ribosomal protein S3 -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 19074.80 Da        Isoelectric Point: 8.0435

>NTDB_id=313504 D2E16_RS00415 WP_192369297.1 80117..80587(+) (comX/sigX) [Streptococcus suis strain YSJ17]
MEFEKVYDSVKGIVNKTRKEFYIKLWDRDDWEQEGMMTLFELLEDQPWLLGEQAQLYCYFKVKFRNRVKDRVRRQESQKR
KFDRMPHEDIHDLSHVIQSPGLVNDELLLLRGALRDYRKNLSMDQLENYEKLISGQSFNGRKNMLRDLQEHLKDFR

Nucleotide


Download         Length: 471 bp        

>NTDB_id=313504 D2E16_RS00415 WP_192369297.1 80117..80587(+) (comX/sigX) [Streptococcus suis strain YSJ17]
ATGGAATTTGAAAAGGTCTATGATAGTGTAAAAGGGATTGTCAACAAGACTCGAAAAGAGTTTTATATCAAGCTGTGGGA
CAGAGATGATTGGGAACAGGAAGGCATGATGACCTTGTTTGAATTATTGGAAGACCAGCCGTGGTTGCTTGGTGAGCAGG
CTCAACTATATTGCTACTTCAAGGTCAAATTCCGAAATCGGGTCAAAGACCGCGTACGCAGACAAGAAAGTCAGAAGCGT
AAGTTTGATCGTATGCCACATGAAGACATTCATGATTTATCTCACGTCATACAATCGCCAGGTTTAGTCAATGACGAGCT
TTTGTTGTTGAGAGGTGCCTTAAGAGATTATCGGAAAAATTTGTCTATGGACCAATTGGAAAATTATGAAAAACTAATTA
GTGGTCAGAGTTTCAATGGTCGTAAGAATATGCTTAGGGATTTACAAGAACACTTAAAGGACTTTCGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX Streptococcus suis D9

86.538

100

0.865
  comX/sigX Streptococcus suis isolate S10

85.897

100

0.859
  comX/sigX Streptococcus suis P1/7

85.897

100

0.859
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

49.677

99.359

0.494
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

49.677

99.359

0.494
  comX/sigX Streptococcus mutans UA159

43.871

99.359

0.436
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

43.791

98.077

0.429
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

43.791

98.077

0.429
  comX/comX2 Streptococcus pneumoniae TIGR4

43.709

96.795

0.423
  comX/comX1 Streptococcus pneumoniae TIGR4

43.709

96.795

0.423
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

43.137

98.077

0.423
  comX/comX1 Streptococcus pneumoniae R6

42.484

98.077

0.417
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

42.484

98.077

0.417
  comX/comX2 Streptococcus pneumoniae Rx1

42.484

98.077

0.417
  comX/comX1 Streptococcus pneumoniae Rx1

42.484

98.077

0.417
  comX/comX2 Streptococcus pneumoniae D39

42.484

98.077

0.417
  comX/comX1 Streptococcus pneumoniae D39

42.484

98.077

0.417
  comX/comX2 Streptococcus pneumoniae R6

42.484

98.077

0.417
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

40.764

100

0.41
  comX Streptococcus thermophilus LMD-9

40.523

98.077

0.397
  comX Streptococcus thermophilus LMG 18311

40.523

98.077

0.397
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

40

99.359

0.397
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

40

99.359

0.397
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

39.355

99.359

0.391
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

39.355

99.359

0.391
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

39.355

99.359

0.391
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

39.355

99.359

0.391
  comX Streptococcus salivarius SK126

39.869

98.077

0.391
  comX/sigX Streptococcus salivarius strain HSISS4

39.869

98.077

0.391
  comX Streptococcus sobrinus strain NIDR 6715-7

37.908

98.077

0.372

Multiple sequence alignment