Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   D2E16_RS00380 Genome accession   NZ_CP032064
Coordinates   75152..76333 (+) Length   393 a.a.
NCBI ID   WP_192369292.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 70152..81333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS00365 (D2E16_00385) mutL 71706..73643 (+) 1938 WP_192369290.1 DNA mismatch repair endonuclease MutL -
  D2E16_RS00370 (D2E16_00390) ruvA 73682..74272 (+) 591 WP_136648117.1 Holliday junction branch migration protein RuvA -
  D2E16_RS00375 (D2E16_00395) - 74546..75115 (+) 570 WP_192369291.1 DNA-3-methyladenine glycosylase I -
  D2E16_RS00380 (D2E16_00400) cinA 75152..76333 (+) 1182 WP_192369292.1 competence/damage-inducible protein A Machinery gene
  D2E16_RS00385 (D2E16_00405) recA 76385..77536 (+) 1152 WP_192369293.1 recombinase RecA Machinery gene
  D2E16_RS00390 (D2E16_00410) spx 77695..78093 (+) 399 WP_105108276.1 transcriptional regulator Spx -
  D2E16_RS00395 (D2E16_00415) - 78199..78465 (+) 267 WP_105108277.1 IreB family regulatory phosphoprotein -
  D2E16_RS00400 (D2E16_00420) ruvX 78465..78884 (+) 420 WP_192369294.1 Holliday junction resolvase RuvX -
  D2E16_RS00405 (D2E16_00425) - 78896..79213 (+) 318 WP_192369295.1 DUF1292 domain-containing protein -
  D2E16_RS00410 (D2E16_00430) - 79467..80027 (+) 561 WP_192369296.1 nucleotidyltransferase family protein -
  D2E16_RS00415 (D2E16_00435) comX/sigX 80117..80587 (+) 471 WP_192369297.1 sigma-70 family RNA polymerase sigma factor Regulator
  D2E16_RS00420 (D2E16_00440) rpsJ 80854..81162 (+) 309 WP_014735259.1 30S ribosomal protein S10 -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 42783.67 Da        Isoelectric Point: 4.5212

>NTDB_id=313502 D2E16_RS00380 WP_192369292.1 75152..76333(+) (cinA) [Streptococcus suis strain YSJ17]
MKAELIAVGTEILTGQIVNTNAQFLSEKCAELGIDVYFHTAVGDNEQRLLSVLEVASKRSDVVILCGGLGPTEDDLTKQT
LATFLGRKLVFDDEAMAKLDRFFASRPGRVRTPNNERQAQIVEGSLALQNPAGLAVGGMIEQEGVTYIVLPGPPSELKAM
FTESLQPLLHQSGQQLYSRVLRFFGIGESQLVTVLADLIDNQTDPTLAPYAKVGEVTLRLSTKATNQEEANLRLSQLEEE
ILQRNKLADYFYAYGEDNSLAQTVATGLVEKKQAIAIVEQGTGGLLQAELSLALADQPYFSGGKVIGQKGIESGWLSEDA
GRIRQELQADLGLAASVLIKPESTKDNVLAKVYLTLATTSGISQKEIDLGGYSWQYLRQLACLQAWDFVRNTL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=313502 D2E16_RS00380 WP_192369292.1 75152..76333(+) (cinA) [Streptococcus suis strain YSJ17]
ATGAAAGCAGAACTAATCGCCGTTGGGACGGAGATTTTGACAGGCCAAATCGTTAATACCAACGCCCAGTTCCTTTCGGA
GAAATGTGCAGAGCTGGGAATTGATGTTTATTTCCACACAGCTGTTGGAGATAATGAACAGCGACTTCTATCTGTACTGG
AAGTAGCCAGCAAACGCAGTGATGTGGTTATCTTGTGTGGAGGTTTAGGTCCAACGGAAGATGATTTGACCAAGCAGACC
CTGGCGACTTTCTTAGGTAGAAAATTGGTCTTTGATGATGAAGCTATGGCAAAATTAGACCGTTTCTTTGCCAGTCGTCC
AGGTCGTGTCCGTACACCAAATAATGAACGTCAGGCACAGATTGTTGAAGGTAGCCTCGCCTTGCAGAACCCAGCTGGTT
TAGCTGTTGGTGGTATGATTGAGCAAGAGGGTGTGACCTATATTGTCTTGCCTGGTCCACCAAGCGAACTCAAGGCTATG
TTTACAGAAAGTTTACAGCCCTTGCTTCATCAGTCAGGTCAACAACTCTACTCTCGTGTTCTACGTTTTTTTGGAATAGG
AGAAAGCCAGTTGGTAACGGTTTTGGCAGATCTAATTGATAACCAAACAGACCCAACTCTTGCACCCTATGCCAAGGTTG
GAGAGGTAACTTTACGCTTGTCCACCAAGGCGACCAACCAAGAAGAAGCAAATCTACGTTTGAGTCAGTTGGAAGAAGAA
ATCTTGCAACGGAACAAACTGGCAGACTATTTCTATGCCTACGGCGAGGACAATAGTTTAGCTCAAACGGTAGCGACTGG
TTTGGTGGAGAAAAAACAAGCCATTGCTATCGTCGAACAGGGGACAGGTGGTCTCTTGCAGGCTGAATTGAGCCTGGCTT
TGGCTGATCAGCCGTATTTTAGCGGAGGGAAAGTCATCGGTCAGAAGGGAATAGAATCGGGCTGGCTATCAGAAGATGCA
GGTCGCATTCGACAGGAGCTGCAAGCTGATTTGGGGCTGGCTGCATCGGTGCTTATCAAGCCTGAATCAACAAAGGACAA
CGTACTAGCAAAAGTATATCTCACTTTGGCTACGACCTCGGGTATTTCCCAAAAAGAGATAGATTTAGGTGGTTATTCGT
GGCAATACCTTCGCCAGCTTGCTTGTTTGCAGGCCTGGGATTTTGTACGAAACACTTTGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus suis isolate S10

90.84

100

0.908
  cinA Streptococcus pneumoniae TIGR4

55.769

100

0.59
  cinA Streptococcus pneumoniae Rx1

55.769

100

0.59
  cinA Streptococcus pneumoniae R6

55.769

100

0.59
  cinA Streptococcus pneumoniae D39

55.529

100

0.588
  cinA Streptococcus mitis SK321

55.048

100

0.583
  cinA Streptococcus mitis NCTC 12261

54.808

100

0.58
  cinA Streptococcus mutans UA159

55.474

100

0.58
  cinA Bacillus subtilis subsp. subtilis str. 168

48.534

78.117

0.379

Multiple sequence alignment