Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA/cilB/dalA   Type   Machinery gene
Locus tag   CW734_RS19035 Genome accession   NZ_CP025135
Coordinates   1992226..1992705 (-) Length   159 a.a.
NCBI ID   WP_232787037.1    Uniprot ID   -
Organism   Planococcus sp. MB-3u-03     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1987226..1997705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CW734_RS11275 (CW734_11270) xerC 1987753..1988646 (-) 894 WP_101190524.1 tyrosine recombinase XerC -
  CW734_RS11280 (CW734_11275) trmFO 1988716..1990026 (-) 1311 WP_180956211.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CW734_RS11285 (CW734_11280) topA 1990047..1992116 (-) 2070 WP_101190526.1 type I DNA topoisomerase -
  CW734_RS19035 dprA/cilB/dalA 1992226..1992705 (-) 480 WP_232787037.1 DNA-processing protein DprA Machinery gene
  CW734_RS19040 - 1992759..1993112 (-) 354 WP_232787038.1 DNA-protecting protein DprA -
  CW734_RS11295 (CW734_11290) - 1993197..1993940 (-) 744 WP_101190527.1 hypothetical protein -
  CW734_RS11300 (CW734_11295) sucD 1994095..1994997 (-) 903 WP_101190528.1 succinate--CoA ligase subunit alpha -
  CW734_RS11305 (CW734_11300) sucC 1995016..1996176 (-) 1161 WP_058383573.1 ADP-forming succinate--CoA ligase subunit beta -
  CW734_RS11310 (CW734_11305) - 1996298..1997068 (-) 771 WP_101190529.1 ribonuclease HII -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17190.93 Da        Isoelectric Point: 8.0856

>NTDB_id=258552 CW734_RS19035 WP_232787037.1 1992226..1992705(-) (dprA/cilB/dalA) [Planococcus sp. MB-3u-03]
MLPPLLAEGFVIVSGLAKGADAMAHRCAIDSGGKTIAVIGSGFLHRYPKVNDGLSFIIEETQLLVSEYPPYMPPRKWNFP
MRNRIISGLSKGVIVTQAEVKSGTLSTIEHALDHGKDIFAVPGDIFSPLSAGPHKLIAEGAKPVWNGAQVLEEYRQLRS

Nucleotide


Download         Length: 480 bp        

>NTDB_id=258552 CW734_RS19035 WP_232787037.1 1992226..1992705(-) (dprA/cilB/dalA) [Planococcus sp. MB-3u-03]
TTGCTTCCGCCTTTACTGGCAGAAGGCTTCGTCATCGTCAGCGGCTTGGCGAAAGGAGCAGATGCGATGGCGCATCGATG
TGCCATCGATTCCGGCGGCAAAACCATTGCCGTCATAGGGAGTGGCTTTTTGCACCGCTACCCGAAAGTCAACGATGGGC
TGTCCTTTATAATAGAAGAAACTCAATTGCTGGTGAGTGAATATCCACCATATATGCCCCCTAGAAAGTGGAATTTCCCG
ATGCGCAACCGCATCATCAGTGGATTGTCGAAGGGGGTCATCGTCACGCAGGCAGAAGTGAAAAGCGGAACTTTAAGCAC
CATTGAGCACGCATTGGACCACGGTAAAGATATCTTCGCCGTTCCTGGGGATATCTTTTCCCCGCTTTCCGCCGGCCCTC
ATAAATTAATTGCAGAAGGCGCAAAACCCGTCTGGAACGGGGCTCAAGTGCTGGAAGAATACCGCCAATTGAGAAGCTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(5-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

52.667

94.34

0.497
  dprA/cilB/dalA Streptococcus mitis SK321

52.667

94.34

0.497
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

52.667

94.34

0.497
  dprA/cilB/dalA Streptococcus pneumoniae D39

52.667

94.34

0.497
  dprA/cilB/dalA Streptococcus pneumoniae R6

52.667

94.34

0.497
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

52.667

94.34

0.497
  dprA Bacillus subtilis subsp. subtilis str. 168

51.007

93.711

0.478
  dprA Streptococcus mutans UA159

49.664

93.711

0.465
  dprA Vibrio campbellii strain DS40M4

47.059

96.226

0.453
  dprA Lactococcus lactis subsp. cremoris KW2

48.322

93.711

0.453
  dprA Haemophilus influenzae Rd KW20

47.651

93.711

0.447
  dprA Legionella pneumophila strain ERS1305867

48.299

92.453

0.447
  dprA Staphylococcus aureus MW2

47.297

93.082

0.44
  dprA Staphylococcus aureus N315

47.297

93.082

0.44
  dprA Glaesserella parasuis strain SC1401

46.309

93.711

0.434
  dprA Vibrio cholerae strain A1552

45.695

94.969

0.434
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.506

96.855

0.421
  dprA Acinetobacter baylyi ADP1

44

94.34

0.415
  dprA Latilactobacillus sakei subsp. sakei 23K

45.517

91.195

0.415
  dprA Neisseria meningitidis strain C311

44.521

91.824

0.409
  dprA Neisseria meningitidis MC58

44.521

91.824

0.409
  dprA Acinetobacter baumannii D1279779

43.333

94.34

0.409
  dprA Acinetobacter baumannii strain A118

43.333

94.34

0.409
  dprA Neisseria gonorrhoeae MS11

45.185

84.906

0.384
  dprA Thermus thermophilus HB27

41.958

89.937

0.377
  dprA Neisseria gonorrhoeae strain FA1090

44.444

84.906

0.377

Multiple sequence alignment