Detailed information    

insolico Bioinformatically predicted

Overview


Name   Cj0011c   Type   Machinery gene
Locus tag   A6J93_RS00320 Genome accession   NZ_CP022079
Coordinates   14604..14843 (-) Length   79 a.a.
NCBI ID   WP_002853093.1    Uniprot ID   A0AB36GBA9
Organism   Campylobacter jejuni strain FDAARGOS_265     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 9604..19843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J93_RS00305 (A6J93_00305) - 10796..12547 (+) 1752 WP_002853121.1 DUF262 domain-containing protein -
  A6J93_RS00310 (A6J93_00310) gltD 12550..13995 (+) 1446 WP_002868314.1 glutamate synthase subunit beta -
  A6J93_RS00315 (A6J93_00315) rnhB 13996..14571 (-) 576 WP_002853153.1 ribonuclease HII -
  A6J93_RS00320 (A6J93_00320) Cj0011c 14604..14843 (-) 240 WP_002853093.1 ComEA family DNA-binding protein Machinery gene
  A6J93_RS00325 (A6J93_00325) rrc 14908..15555 (-) 648 WP_002868315.1 ferritin family protein -
  A6J93_RS00330 (A6J93_00330) ilvD 15715..17391 (+) 1677 WP_002853088.1 dihydroxy-acid dehydratase -
  A6J93_RS00335 (A6J93_00335) - 17403..17927 (-) 525 WP_088585112.1 YagU family protein -
  A6J93_RS00340 (A6J93_00340) - 18019..19245 (-) 1227 WP_002853125.1 HD domain-containing protein -

Sequence


Protein


Download         Length: 79 a.a.        Molecular weight: 8852.50 Da        Isoelectric Point: 10.1677

>NTDB_id=236478 A6J93_RS00320 WP_002853093.1 14604..14843(-) (Cj0011c) [Campylobacter jejuni strain FDAARGOS_265]
MKKLLFLFFALTAFLFGAVNINTATLKELKSLNGIGEAKAKAILEYRKEANFTSIDDLKKVKGIGDKLFEKIKNDITIE

Nucleotide


Download         Length: 240 bp        

>NTDB_id=236478 A6J93_RS00320 WP_002853093.1 14604..14843(-) (Cj0011c) [Campylobacter jejuni strain FDAARGOS_265]
ATGAAAAAATTACTATTTTTATTTTTTGCTTTAACGGCTTTTCTCTTTGGTGCTGTAAATATCAACACTGCAACACTAAA
AGAATTAAAAAGTTTAAATGGTATTGGCGAAGCTAAAGCTAAAGCGATTTTAGAATACCGCAAAGAAGCAAATTTTACAA
GTATTGATGATCTTAAAAAAGTTAAAGGCATAGGTGATAAGCTTTTTGAAAAAATCAAAAATGATATCACAATAGAATAA

Domains


Predicted by InterproScan.

(18-77)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

  comE Neisseria gonorrhoeae MS11

51.852

100

0.532

  comE Neisseria gonorrhoeae MS11

51.852

100

0.532

  comE Neisseria gonorrhoeae MS11

51.852

100

0.532

  comE Neisseria gonorrhoeae MS11

51.852

100

0.532

  comEA Staphylococcus aureus N315

57.377

77.215

0.443

  comEA Bacillus subtilis subsp. subtilis str. 168

57.377

77.215

0.443

  comEA Staphylococcus aureus MW2

57.377

77.215

0.443

  comEA Acinetobacter baylyi ADP1

57.377

77.215

0.443

  comEA Lactococcus lactis subsp. cremoris KW2

53.226

78.481

0.418

  comEA Vibrio cholerae strain A1552

62.745

64.557

0.405

  comEA Vibrio cholerae C6706

62.745

64.557

0.405

  comEA/comE1 Glaesserella parasuis strain SC1401

49.206

79.747

0.392

  comEA/celA/cilE Streptococcus pneumoniae Rx1

49.206

79.747

0.392

  comEA/celA/cilE Streptococcus pneumoniae D39

49.206

79.747

0.392

  comEA/celA/cilE Streptococcus pneumoniae R6

49.206

79.747

0.392

  comEA/celA/cilE Streptococcus pneumoniae TIGR4

49.206

79.747

0.392

  comEA/celA/cilE Streptococcus mitis NCTC 12261

49.206

79.747

0.392

  comEA/celA/cilE Streptococcus mitis SK321

47.619

79.747

0.38

  comEA Acinetobacter baumannii D1279779

47.619

79.747

0.38

  comE1/comEA Haemophilus influenzae Rd KW20

50.847

74.684

0.38

  comEA Acinetobacter baumannii strain A118

46.032

79.747

0.367

  comEA Vibrio campbellii strain DS40M4

48.333

75.949

0.367


Multiple sequence alignment