Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SDD27957_09635 Genome accession   CM001076
Coordinates   1820880..1821662 (-) Length   260 a.a.
NCBI ID   EFY03524.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1815880..1826662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_09605 - 1816533..1817036 (-) 504 EFY03518.1 CBS domain protein -
  SDD27957_09610 - 1817358..1817657 (-) 300 EFY03519.1 hypothetical protein -
  SDD27957_09615 - 1817650..1819302 (-) 1653 EFY03520.1 pyridine nucleotide-disulfide oxidoreductase -
  SDD27957_09620 - 1819312..1819650 (-) 339 EFY03521.1 rhodanese-related sulfurtransferase -
  SDD27957_09625 - 1819862..1820122 (+) 261 EFY03522.1 hypothetical protein -
  SDD27957_09630 - 1820189..1820737 (-) 549 EFY03523.1 isochorismatase family protein -
  SDD27957_09635 codY 1820880..1821662 (-) 783 EFY03524.1 transcriptional repressor CodY Regulator
  SDD27957_09640 - 1821927..1823141 (-) 1215 EFY03525.1 aminotransferase AlaT -
  SDD27957_09645 - 1823478..1823930 (+) 453 EFY03526.1 universal stress protein -
  SDD27957_09650 - 1824093..1825481 (-) 1389 EFY03527.1 haloacid dehalogenase-like hydrolase -
  SDD27957_09655 - 1825871..1826368 (-) 498 EFY03528.1 staphylokinase precursor -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 28762.92 Da        Isoelectric Point: 4.4678

>NTDB_id=20088 SDD27957_09635 EFY03524.1 1820880..1821662(-) (codY) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MPNLLEKTRKITSILQRSVDSLETELPYNTMASRLADIIDCNACIINGGGTLLGYAMKYKTNTDRVEEFFEAKQFPDTYV
KAASRVYDTEANLSVESELTIFPLESKDIYPDGLTTIAPIYGGGMRLGSLIIWRNDNEFSDEDLILVEISSTVVGIQLLN
LQTENLEETIRKQTAVNMAINTLSYSEMKAVAAILGELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKEF

Nucleotide


Download         Length: 783 bp        

>NTDB_id=20088 SDD27957_09635 EFY03524.1 1820880..1821662(-) (codY) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGCCTAACTTATTAGAAAAAACTCGTAAAATTACGTCTATTCTACAGCGCTCTGTAGATAGCTTGGAGACAGAACTCCC
TTATAATACGATGGCGTCTCGCTTGGCAGATATTATTGACTGTAATGCCTGCATTATAAATGGCGGAGGAACCCTACTTG
GTTACGCCATGAAATATAAAACCAATACAGATCGTGTTGAGGAATTTTTTGAAGCTAAGCAATTTCCAGATACTTATGTC
AAAGCAGCTAGCCGTGTCTACGATACTGAGGCCAATCTTTCAGTGGAAAGTGAATTAACCATTTTTCCTTTGGAATCGAA
AGACATCTATCCAGATGGTTTGACAACGATTGCACCGATTTATGGTGGAGGTATGCGACTGGGATCTCTTATTATTTGGC
GCAACGATAATGAGTTTAGTGATGAGGACCTCATCTTGGTTGAAATTTCAAGCACGGTTGTTGGGATTCAGCTGTTAAAT
CTTCAAACAGAAAACCTGGAAGAAACGATCCGCAAGCAAACAGCTGTCAACATGGCTATTAACACCCTATCTTATTCAGA
AATGAAGGCTGTTGCAGCTATTCTTGGTGAATTGGATGGTAACGAAGGCCGTTTAACAGCTTCTGTTATTGCTGACCGTA
TCGGTATTACACGATCTGTGATCGTCAATGCCCTTCGTAAATTGGAAAGTGCTGGTATTATTGAAAGTCGCTCTCTGGGC
ATGAAGGGAACCTACCTCAAGGTTATTAATGAGGGAATTTTTGATAAATTGAAAGAATTTTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-260)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

66.537

98.846

0.658
  codY Bacillus subtilis subsp. subtilis str. 168

52.632

95

0.5

Multiple sequence alignment