Detailed information    

insolico Bioinformatically predicted

Overview


Name   Cj0011c   Type   Machinery gene
Locus tag   AEI26_RS08750 Genome accession   NZ_CP012212
Coordinates   1654246..1654485 (-) Length   79 a.a.
NCBI ID   WP_044778569.1    Uniprot ID   A0A1E7NW00
Organism   Campylobacter jejuni strain CJ017CCUA     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1649246..1659485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI26_RS08740 (AEI26_08670) gltD 1652192..1653637 (+) 1446 WP_070298719.1 glutamate synthase subunit beta -
  AEI26_RS08745 (AEI26_08675) rnhB 1653638..1654213 (-) 576 WP_052949448.1 ribonuclease HII -
  AEI26_RS08750 (AEI26_08680) Cj0011c 1654246..1654485 (-) 240 WP_044778569.1 ComEA family DNA-binding protein Machinery gene
  AEI26_RS08755 (AEI26_08685) rrc 1654550..1655197 (-) 648 WP_070298720.1 ferritin family protein -
  AEI26_RS08760 (AEI26_08690) ilvD 1655356..1657032 (+) 1677 WP_070298721.1 dihydroxy-acid dehydratase -
  AEI26_RS08765 (AEI26_08695) - 1657044..1657568 (-) 525 WP_052859123.1 YagU family protein -
  AEI26_RS08770 (AEI26_08700) - 1657660..1658886 (-) 1227 WP_052859121.1 HD domain-containing protein -

Sequence


Protein


Download         Length: 79 a.a.        Molecular weight: 8850.53 Da        Isoelectric Point: 10.1677

>NTDB_id=152338 AEI26_RS08750 WP_044778569.1 1654246..1654485(-) (Cj0011c) [Campylobacter jejuni strain CJ017CCUA]
MKKLLFLFFALTAFLFGAVNINTATLKELKSLNGIGEAKAKAILEYRKEANFTSIDDLKKVKGIGDKLFEKIKNDIIVE

Nucleotide


Download         Length: 240 bp        

>NTDB_id=152338 AEI26_RS08750 WP_044778569.1 1654246..1654485(-) (Cj0011c) [Campylobacter jejuni strain CJ017CCUA]
ATGAAAAAATTACTATTTTTATTTTTTGCTTTAACGGCTTTTCTCTTTGGTGCTGTAAATATCAACACTGCAACGCTAAA
AGAATTAAAAAGTTTAAATGGTATTGGCGAAGCTAAGGCTAAAGCAATTTTAGAATACCGCAAAGAAGCAAATTTTACAA
GTATTGATGATCTTAAAAAAGTTAAAGGCATAGGTGATAAGCTTTTTGAAAAAATCAAAAATGATATCATAGTAGAATAA

Domains


Predicted by InterproScan.

(18-76)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A1E7NW00

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.468

100

0.975

  comE Neisseria gonorrhoeae MS11

53.086

100

0.544

  comE Neisseria gonorrhoeae MS11

53.086

100

0.544

  comE Neisseria gonorrhoeae MS11

53.086

100

0.544

  comE Neisseria gonorrhoeae MS11

53.086

100

0.544

  comEA Bacillus subtilis subsp. subtilis str. 168

57.377

77.215

0.443

  comEA Acinetobacter baylyi ADP1

55.738

77.215

0.43

  comEA Staphylococcus aureus MW2

57.895

72.152

0.418

  comEA Staphylococcus aureus N315

57.895

72.152

0.418

  comEA Lactococcus lactis subsp. cremoris KW2

51.613

78.481

0.405

  comEA Vibrio cholerae C6706

62.745

64.557

0.405

  comEA Vibrio cholerae strain A1552

62.745

64.557

0.405

  comE1/comEA Haemophilus influenzae Rd KW20

51.667

75.949

0.392

  comEA/celA/cilE Streptococcus pneumoniae D39

49.206

79.747

0.392

  comEA/celA/cilE Streptococcus mitis NCTC 12261

49.206

79.747

0.392

  comEA/celA/cilE Streptococcus pneumoniae R6

49.206

79.747

0.392

  comEA/celA/cilE Streptococcus pneumoniae TIGR4

49.206

79.747

0.392

  comEA/celA/cilE Streptococcus pneumoniae Rx1

49.206

79.747

0.392

  comEA/celA/cilE Streptococcus mitis SK321

47.619

79.747

0.38

  comEA/comE1 Glaesserella parasuis strain SC1401

47.619

79.747

0.38

  comEA Acinetobacter baumannii D1279779

49.18

77.215

0.38

  comEA Acinetobacter baumannii strain A118

47.541

77.215

0.367

  comEA Vibrio campbellii strain DS40M4

46.774

78.481

0.367


Multiple sequence alignment