Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   H733_RS01710 Genome accession   NZ_CP007805
Coordinates   343388..343894 (-) Length   168 a.a.
NCBI ID   WP_038439363.1    Uniprot ID   -
Organism   Haemophilus influenzae CGSHiCZ412602     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 338388..348894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H733_RS01675 (H733_0325) nudC 338535..339329 (-) 795 WP_038439358.1 NAD(+) diphosphatase -
  H733_RS01680 (H733_0326) nfuA 339396..339992 (-) 597 WP_038439359.1 Fe-S biogenesis protein NfuA -
  H733_RS01685 (H733_0327) - 340068..340754 (-) 687 WP_038439360.1 ComF family protein -
  H733_RS01690 (H733_0328) - 340889..341110 (-) 222 Protein_316 transposase -
  H733_RS01695 (H733_0329) comE 341107..342450 (-) 1344 WP_038439361.1 type IV pilus secretin PilQ family protein Machinery gene
  H733_RS01700 (H733_0330) comD 342460..342873 (-) 414 WP_032823984.1 pilus assembly protein PilP Machinery gene
  H733_RS01705 (H733_0331) comC 342870..343391 (-) 522 WP_005662592.1 competence protein ComC Machinery gene
  H733_RS01710 (H733_0332) comB 343388..343894 (-) 507 WP_038439363.1 competence protein ComB Machinery gene
  H733_RS01715 (H733_0333) comA 343895..344692 (-) 798 WP_038439365.1 pilus assembly protein PilM Machinery gene
  H733_RS01720 (H733_0334) - 344791..347385 (+) 2595 WP_038439366.1 penicillin-binding protein 1A -
  H733_RS01725 (H733_0335) - 347462..348307 (+) 846 WP_038439368.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  H733_RS01730 (H733_0336) - 348460..348789 (+) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19793.72 Da        Isoelectric Point: 9.4939

>NTDB_id=123483 H733_RS01710 WP_038439363.1 343388..343894(-) (comB) [Haemophilus influenzae CGSHiCZ412602]
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLNQQLHKTTMQIDQLRRAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK

Nucleotide


Download         Length: 507 bp        

>NTDB_id=123483 H733_RS01710 WP_038439363.1 343388..343894(-) (comB) [Haemophilus influenzae CGSHiCZ412602]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTCGTTTGAACAACTTAATCAACAGCTTCATAAAACTACCATGCAAATTGATCAGTTACGCAGAGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCGAATAACTTAAGCTTGGAAGGTAACGCACAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae Rd KW20

99.405

100

0.994
  comB Haemophilus influenzae 86-028NP

98.81

100

0.988

Multiple sequence alignment