Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   P6S15_RS15655 Genome accession   NZ_OX443570
Coordinates   3105146..3105694 (+) Length   182 a.a.
NCBI ID   WP_318766100.1    Uniprot ID   -
Organism   Lactiplantibacillus carotarum strain AMBF275     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3100146..3110694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6S15_RS15625 (P6S16_RS15705) - 3100538..3100759 (+) 222 WP_318766095.1 YozE family protein -
  P6S15_RS15630 - 3100790..3102296 (+) 1507 Protein_3038 S41 family peptidase -
  P6S15_RS15635 (P6S16_RS15725) - 3102384..3102869 (+) 486 WP_318766097.1 GNAT family N-acetyltransferase -
  P6S15_RS15640 (P6S16_RS15730) ylqF 3103182..3104035 (+) 854 Protein_3040 ribosome biogenesis GTPase YlqF -
  P6S15_RS15645 (P6S16_RS15735) - 3104028..3104792 (+) 765 WP_318766098.1 ribonuclease HII -
  P6S15_RS15650 (P6S16_RS15740) - 3104829..3105164 (+) 336 WP_318766099.1 hypothetical protein -
  P6S15_RS15655 (P6S16_RS15745) dprA 3105146..3105694 (+) 549 WP_318766100.1 DNA-processing protein DprA Machinery gene
  P6S15_RS15660 (P6S16_RS15750) topA 3105783..3107929 (+) 2147 Protein_3044 type I DNA topoisomerase -
  P6S15_RS15665 (P6S16_RS15755) - 3108120..3109769 (+) 1650 WP_318766101.1 peptidoglycan amidohydrolase family protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19500.77 Da        Isoelectric Point: 10.3390

>NTDB_id=1158416 P6S15_RS15655 WP_318766100.1 3105146..3105694(+) (dprA) [Lactiplantibacillus carotarum strain AMBF275]
MRGRKLAVVGARQSTSYGARCVSRLLTPLVPEKLTIVSGLAVGIDGWSHRTALNCGLPTIAVIGTGLDAYYPRENATLQR
RVGQVGLLISEYPLGTGPARYRFPERNRIIAGLCQTLIVIEARERSGSLITANLALQNNRNVLAVPGPIDAPLSVGCNQL
IAAGAKPVLNSRHIIEEFLPII

Nucleotide


Download         Length: 549 bp        

>NTDB_id=1158416 P6S15_RS15655 WP_318766100.1 3105146..3105694(+) (dprA) [Lactiplantibacillus carotarum strain AMBF275]
TTGCGTGGCCGCAAGTTAGCAGTCGTTGGCGCCCGCCAGTCGACGAGTTACGGGGCGCGCTGCGTGTCCCGGTTACTAAC
GCCGTTAGTTCCGGAAAAGCTGACGATTGTTAGTGGCTTGGCCGTCGGAATCGATGGCTGGTCGCACCGGACGGCCCTTA
ACTGTGGATTACCCACGATCGCGGTGATCGGCACCGGGCTAGATGCTTACTATCCGCGTGAAAACGCGACGTTACAGCGG
CGGGTTGGCCAAGTTGGCTTACTAATTAGTGAGTACCCGTTAGGCACCGGTCCGGCCCGTTACCGTTTTCCTGAACGCAA
CCGGATCATTGCGGGTCTATGTCAAACGTTGATCGTCATCGAGGCGCGGGAACGTTCTGGCAGCTTGATTACCGCTAATT
TAGCGTTACAAAACAACCGCAACGTGTTGGCGGTACCCGGTCCGATCGACGCGCCATTGTCGGTCGGTTGCAATCAACTG
ATTGCCGCAGGGGCGAAACCAGTGCTAAATTCACGACATATAATAGAAGAGTTTTTACCGATAATTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(4-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

59.538

95.055

0.566
  dprA Lactococcus lactis subsp. cremoris KW2

49.721

98.352

0.489
  dprA/cilB/dalA Streptococcus pneumoniae R6

50.575

95.604

0.484
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

50.575

95.604

0.484
  dprA/cilB/dalA Streptococcus pneumoniae D39

50.575

95.604

0.484
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

50.575

95.604

0.484
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

50.575

95.604

0.484
  dprA/cilB/dalA Streptococcus mitis SK321

50

95.604

0.478
  dprA Streptococcus mutans UA159

48.276

95.604

0.462
  dprA Staphylococcus aureus MW2

48

96.154

0.462
  dprA Staphylococcus aureus N315

48

96.154

0.462
  dprA Legionella pneumophila strain ERS1305867

46.591

96.703

0.451
  dprA Haemophilus influenzae Rd KW20

44.828

95.604

0.429
  dprA Neisseria meningitidis MC58

45.614

93.956

0.429
  dprA Neisseria meningitidis strain C311

45.614

93.956

0.429
  dprA Bacillus subtilis subsp. subtilis str. 168

43.503

97.253

0.423
  dprA Thermus thermophilus HB27

45.029

93.956

0.423
  dprA Vibrio campbellii strain DS40M4

42.697

97.802

0.418
  dprA Acinetobacter baylyi ADP1

42.614

96.703

0.412
  dprA Neisseria gonorrhoeae MS11

46.875

87.912

0.412
  dprA Glaesserella parasuis strain SC1401

42.775

95.055

0.407
  dprA Neisseria gonorrhoeae strain FA1090

46.25

87.912

0.407
  dprA Vibrio cholerae strain A1552

42.197

95.055

0.401
  dprA Acinetobacter baumannii D1279779

40.571

96.154

0.39
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.889

98.901

0.385
  dprA Acinetobacter baumannii strain A118

40

96.154

0.385

Multiple sequence alignment