Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QUE61_RS09465 Genome accession   NZ_AP028136
Coordinates   1870042..1870737 (+) Length   231 a.a.
NCBI ID   WP_286306970.1    Uniprot ID   -
Organism   Polynucleobacter sp. HIN5     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1865042..1875737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE61_RS09440 (PHIN5_18400) - 1865635..1866222 (-) 588 WP_286306966.1 DUF4390 domain-containing protein -
  QUE61_RS09445 (PHIN5_18410) rsmB 1866219..1867553 (-) 1335 WP_353506512.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  QUE61_RS09450 (PHIN5_18420) htpX 1867543..1868403 (-) 861 WP_286306967.1 zinc metalloprotease HtpX -
  QUE61_RS09455 (PHIN5_18430) fmt 1868458..1869444 (-) 987 WP_286306968.1 methionyl-tRNA formyltransferase -
  QUE61_RS09460 (PHIN5_18440) def 1869455..1869970 (-) 516 WP_286306969.1 peptide deformylase -
  QUE61_RS09465 (PHIN5_18450) dprA 1870042..1870737 (+) 696 WP_286306970.1 DNA-processing protein DprA Machinery gene
  QUE61_RS09470 (PHIN5_18460) - 1870941..1873565 (+) 2625 WP_286306971.1 DNA topoisomerase III -
  QUE61_RS09475 - 1873595..1874605 (-) 1011 Protein_1856 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 24980.98 Da        Isoelectric Point: 9.1164

>NTDB_id=103980 QUE61_RS09465 WP_286306970.1 1870042..1870737(+) (dprA) [Polynucleobacter sp. HIN5]
MHKQLQSTANFRIQSITQECSHYPKRLLDLSDPPKRLFYIGDIQLLAQPMLAIVGARKASPSGLLLAQHFSSALGLAGYH
IISGMAYGIDGAAHRGILDLRAACKTIAVCGNGLDRTYPPEHHELATRIALQGLLLSEYPPGTCPKGFHFPRRNRIIAAL
SLGVVVIEAAQKSGSLITAYLASSLGREVFVLPGSITSPLFEGSHQLIQEGAKLVRGAQDVLEELPSIRFH

Nucleotide


Download         Length: 696 bp        

>NTDB_id=103980 QUE61_RS09465 WP_286306970.1 1870042..1870737(+) (dprA) [Polynucleobacter sp. HIN5]
ATGCACAAGCAACTCCAATCAACCGCTAATTTTCGAATTCAATCGATCACACAAGAGTGTTCGCATTACCCAAAACGCTT
ATTGGATCTAAGTGACCCACCAAAAAGACTTTTTTATATCGGGGACATTCAGTTATTGGCACAGCCCATGCTAGCAATAG
TAGGGGCGCGCAAGGCCTCGCCCTCTGGACTCTTATTGGCGCAGCACTTTTCCAGCGCCCTGGGACTTGCTGGCTATCAC
ATTATTTCCGGGATGGCCTACGGAATTGATGGCGCCGCCCACCGGGGCATCTTGGATCTTAGGGCGGCCTGCAAAACCAT
CGCGGTTTGCGGCAATGGACTTGATCGTACTTATCCGCCTGAACATCACGAATTGGCAACCCGCATCGCATTACAAGGCC
TTTTACTCTCCGAATACCCACCAGGAACCTGCCCAAAAGGCTTTCATTTTCCAAGGCGCAATCGAATCATCGCCGCCCTC
TCTTTAGGAGTTGTGGTGATTGAGGCTGCCCAAAAATCAGGGTCCCTAATTACGGCCTATTTAGCCAGCTCGCTAGGAAG
AGAGGTTTTCGTTTTACCTGGGTCGATTACATCACCCCTTTTTGAGGGGTCACACCAACTGATTCAGGAAGGGGCGAAAT
TAGTTAGGGGCGCCCAGGATGTGCTTGAAGAATTACCCAGCATCCGCTTTCATTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(11-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

50

96.104

0.481
  dprA Legionella pneumophila strain ERS1305867

48.879

96.537

0.472
  dprA Acinetobacter baylyi ADP1

47.345

97.835

0.463
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

46.667

97.403

0.455
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

46.667

97.403

0.455
  dprA/cilB/dalA Streptococcus pneumoniae D39

46.667

97.403

0.455
  dprA/cilB/dalA Streptococcus pneumoniae R6

46.667

97.403

0.455
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

46.667

97.403

0.455
  dprA Vibrio campbellii strain DS40M4

50.971

89.177

0.455
  dprA Acinetobacter baumannii D1279779

49.289

91.342

0.45
  dprA Glaesserella parasuis strain SC1401

44.635

100

0.45
  dprA/cilB/dalA Streptococcus mitis SK321

46.222

97.403

0.45
  dprA Neisseria meningitidis MC58

50.485

89.177

0.45
  dprA Neisseria meningitidis strain C311

50.485

89.177

0.45
  dprA Neisseria gonorrhoeae MS11

50

89.177

0.446
  dprA Acinetobacter baumannii strain A118

48.815

91.342

0.446
  dprA Streptococcus mutans UA159

47.664

92.641

0.442
  dprA Neisseria gonorrhoeae strain FA1090

49.515

89.177

0.442
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

46.479

92.208

0.429
  dprA Lactococcus lactis subsp. cremoris KW2

47.525

87.446

0.416
  dprA Bacillus subtilis subsp. subtilis str. 168

43.519

93.506

0.407
  dprA Latilactobacillus sakei subsp. sakei 23K

43.541

90.476

0.394
  dprA Haemophilus influenzae Rd KW20

44.608

88.312

0.394
  dprA Staphylococcus aureus MW2

39.474

98.701

0.39
  dprA Staphylococcus aureus N315

39.474

98.701

0.39
  dprA Thermus thermophilus HB27

45

86.58

0.39

Multiple sequence alignment