MGE detailed information
MGE type: Prophage MGE length: 14028 bp
Accession: NZ_CP037923 Location: 1629251..1643278 Organism: Shigella flexneri 5a str. M90T Replicon: chromosome
Accession: NZ_CP037923 Location: 1629251..1643278 Organism: Shigella flexneri 5a str. M90T Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EKN05_RS08320 (EKN05_008350) | 1625764..1626510 | + | 747 | WP_005050098.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| EKN05_RS08325 (EKN05_008355) | 1626599..1627285 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| EKN05_RS08330 (EKN05_008360) | 1627463..1627666 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| EKN05_RS08335 (EKN05_008365) | 1627702..1629162 | - | 1461 | WP_000527766.1 | mannitol dehydrogenase family protein | - |
| EKN05_RS08340 (EKN05_008370) | 1629251..1630270 | - | 1020 | Protein_1610 | MHS family MFS transporter YdfJ | - |
| EKN05_RS08345 (EKN05_008375) | 1630332..1631488 | + | 1157 | WP_136350417.1 | IS3 family transposase IS600 | Transposase |
| EKN05_RS08350 (EKN05_008380) | 1631485..1631790 | - | 306 | WP_071818640.1 | hypothetical protein | - |
| EKN05_RS08355 (EKN05_008385) | 1631815..1632054 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| EKN05_RS08360 (EKN05_008390) | 1632054..1632341 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| EKN05_RS08365 (EKN05_008395) | 1632413..1632568 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| EKN05_RS08370 (EKN05_008400) | 1632786..1633037 | + | 252 | WP_000980987.1 | protein Rem | - |
| EKN05_RS08375 (EKN05_008405) | 1633104..1633382 | + | 279 | WP_024258459.1 | hypothetical protein | - |
| EKN05_RS08380 (EKN05_008410) | 1633384..1634434 | + | 1051 | Protein_1618 | DUF968 domain-containing protein | - |
| EKN05_RS08385 (EKN05_008415) | 1634447..1634821 | + | 375 | WP_000904117.1 | RusA family crossover junction endodeoxyribonuclease | - |
| EKN05_RS25085 | 1634818..1635639 | + | 822 | Protein_1620 | antitermination protein | - |
| EKN05_RS08410 (EKN05_008440) | 1636222..1636500 | + | 279 | WP_001017801.1 | hypothetical protein | - |
| EKN05_RS08415 (EKN05_008445) | 1636559..1636667 | + | 109 | Protein_1622 | DUF3927 family protein | - |
| EKN05_RS08420 (EKN05_008450) | 1636948..1637283 | - | 336 | WP_000871291.1 | anti-adapter protein IraM | - |
| EKN05_RS08425 (EKN05_008455) | 1637543..1637728 | + | 186 | Protein_1624 | DUF1737 domain-containing protein | - |
| EKN05_RS25090 | 1637728..1637889 | + | 162 | WP_001323614.1 | hypothetical protein | - |
| EKN05_RS08430 (EKN05_008460) | 1638039..1638218 | + | 180 | WP_000372594.1 | class II holin family protein | - |
| EKN05_RS08435 (EKN05_008465) | 1638243..1639148 | - | 906 | Protein_1627 | IS3 family transposase ISSd1 | Transposase |
| EKN05_RS08445 (EKN05_008475) | 1639917..1640666 | + | 750 | Protein_1629 | Type 1 fimbrin D-mannose specific adhesin | VF |
| EKN05_RS08450 (EKN05_008480) | 1641000..1643278 | + | 2279 | Protein_1630 | acid resistance putative oxidoreductase YdeP | - |
| EKN05_RS08455 (EKN05_008485) | 1643526..1643729 | + | 204 | WP_000543383.1 | two-component system connector SafA | - |
| EKN05_RS08460 (EKN05_008490) | 1643797..1644558 | + | 762 | WP_000060450.1 | acid stress response transcriptional regulator YdeO | - |
| EKN05_RS08465 (EKN05_008495) | 1644960..1645106 | + | 147 | Protein_1633 | sulfatase | - |
| EKN05_RS08475 (EKN05_008505) | 1645873..1646352 | - | 480 | Protein_1635 | cupin domain-containing protein | - |
| EKN05_RS08480 (EKN05_008510) | 1646668..1647432 | + | 765 | WP_000692137.1 | electron transfer flavoprotein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 2002017 | Prophage | TA26537 | NC_017328 | 1628645..1640061 | 0.009 | |
| Shigella flexneri G1663 | Prophage | TA45975 | NZ_CP007037 | 1551940..1568303 | 0.006 | |
| Shigella flexneri 1a strain 0228 | Prophage | TA57096 | NZ_CP012735 | 3901472..3915475 | 0.003 | |
| Shigella flexneri 4c strain 1602 | Prophage | TA74266 | NZ_CP020336 | 1725543..1739546 | 0.003 | |
| Shigella flexneri 1c strain Y394 | Prophage | TA75387 | NZ_CP020753 | 1565473..1579156 | 0.003 | |
| Shigella flexneri Y strain 93-3063 | Prophage | TA95767 | NZ_CP026768 | 847193..860876 | 0.003 | |
| Shigella flexneri strain 98-3193 | Prophage | TA95813 | NZ_CP026776 | 734716..753511 | 0.01 | |
| Shigella flexneri 2a strain ATCC 29903 | Prophage | TA95941 | NZ_CP026788 | 746837..762568 | 0.005 | |
| Shigella flexneri strain 61-4982 | Prophage | TA95962 | NZ_CP026792 | 2539693..2555722 | 0.006 | |
| Shigella flexneri strain 74-1170 | Prophage | TA95979 | NZ_CP026793 | 4202469..4218818 | 0.006 | |
| Shigella flexneri strain 2016AM-0877 | Prophage | TA113788 | NZ_CP033510 | 4552808..4569181 | 0.006 | |
| Shigella flexneri strain FDAARGOS_535 | Prophage | TA115085 | NZ_CP034060 | 2581276..2594959 | 0.003 | |
| Shigella flexneri strain FC906 | Prophage | TA120615 | NZ_CP037996 | 2946716..2958100 | 0.009 | |
| Shigella flexneri strain AR-0425 | Prophage | TA140346 | NZ_CP044152 | 260297..276645 | 0.006 | |
| Shigella flexneri strain AR-0423 | Prophage | TA140405 | NZ_CP044158 | 1871994..1885996 | 0.003 | |
| Shigella flexneri strain CMCC51574 | Prophage | TA219781 | NZ_CP084879 | 2317908..2329002 | 0.01 | |
| Shigella flexneri strain D | Prophage | TA246308 | NZ_CP097831 | 3205139..3223934 | 0.01 | |
| Shigella flexneri strain C | Prophage | TA246324 | NZ_CP097834 | 1161108..1174791 | 0.003 | |
| Shigella flexneri strain B | Prophage | TA246345 | NZ_CP097837 | 2075828..2089511 | 0.003 | |
| Shigella flexneri strain A | Prophage | TA246369 | NZ_CP097840 | 3204315..3217998 | 0.003 | |
| Shigella flexneri 2a strain Sflex 21-42 | Prophage | TA276100 | NZ_CP121223 | 3995395..4009398 | 0.003 | |
| Shigella flexneri strain AUSMDU00008355 isolate AUSMDU00008355 | Prophage | TA288249 | NZ_LR213452 | 2238199..2251882 | 0.003 |