Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01209  |
| T6SS type | Type Unknown |
| Strain | Pseudomonas fluorescens strain MFE01 |
| Replicon (GenBank) | chromosome (KX941483-KX941502) |
| Location | - |
| Function | anti-bacterial |
| Comment | A Pseudomonas fluorescens type VI secretion system is related to mucoidy, motility and bacterial competition. ME01 tssC phenotype seems similar to a patchwork of MFE01 hcp1 and MFE01 hcp2 phenotypes confirms of Hcp1 and Hcp2 involvement in a T6SS. Hcp1 and Hcp2 contribute to the killing activity. |
| References | [1] Decoin V et al (2014) A Type VI Secretion System Is Involved in Pseudomonas fluorescens Bacterial Competition. PLoS One. 9(2):e89411. [PudMed:24551247] [2] Decoin V et al (2015) A Pseudomonas fluorescens type 6 secretion system is related to mucoidy, motility and bacterial competition. BMC Microbiol. 15(1):72. [PudMed:25886496] |
Experimental investigation has been performed.T6SS components and genome coordinates
| Component | FHA | PpkA | PppA | Sfa2 | TagU | TssD | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| T6CP015309 | TssG | tssG | 1..1008 | + | 1008 | 1143698106 | TssG |
| T6CP015310 | TssH | tssH | 1..2658 | + | 2658 | 1143698108 | TssH |
| T6CP015311 | Sfa2 | sfa2 | 1..1521 | + | 1521 | 1143698110 | Sfa2 |
| T6CP015312 | TagU | tagU | 1..165 | + | 165 | 1143698112 | TagU |
| T6CP015313 | FHA | fha | 1..1197 | + | 1197 | 1143698114 | Fhaq |
| T6CP015314 | TssJ | tssJ | 1..501 | + | 501 | 1143698116 | TssJ |
| T6CP015315 | TssK | tssK | 1..1332 | + | 1332 | 1143698118 | TssK |
| T6CP015316 | TssL | tssL | 1..876 | + | 876 | 1143698120 | TssL |
| T6CP015317 | TssM | tssM | 1..3540 | + | 3540 | 1143698122 | TssM |
| T6CP015318 | PppA | pppA | 1..729 | + | 729 | 1143698124 | PppA |
| T6CP015319 | PpkA | ppkA | 1..1002 | + | 1002 | 1143698126 | PpkA |
| T6CP015320 | TssI | vgrGc2 | 1..2037 | + | 2037 | 1143698128 | VgrG |
| T6CP015321 | TssD | hcp3 | 1..507 | + | 507 | 1143698130 | Hcp |
| T6CP015322 | TssI | vgrG3 | 1..1347 | + | 1347 | 1143698132 | VgrG |
| - | 1..1914 | + | 1914 | 1143698134 | arginine-decarboxylase | ||
| sui1 | 1..408 | + | 408 | 1143698136 | Sui1 | ||
| - | 1..558 | + | 558 | 1143698138 | nudix-hydrolase | ||
| - | 1..1068 | + | 1068 | 1143698140 | hypothetical | ||
| - | 1..498 | + | 498 | 1143698142 | amidase | ||
| tec3 | 1..792 | + | 792 | 1143698144 | Tec3 |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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