Detailed information of component protein


Summary

Component ID T6CP015315
Component protein type TssK
T6SS ID (Type) T6SS01209 experimental (Type Unknown)
Strain Pseudomonas fluorescens strain MFE01
Replicon chromosome
Sequence Protein sequence (444 a.a.); Nucleotide sequence (1332 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 1..1332 (+)
NCBI ID AQM58480.1
GenBank KX941489
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.7e-141 18..441
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-443 MNTHKVIWQEGMLLRPQHFQHNDRYYDHQMKTRTQLLGGYTWGFLNLEIDLQFLNMGKLVISEASGILPDGSLFELGGNTEPLALDVPPNTGNTPIYLALPLVTGNHIEARRPEQSDVLARYTAYDAEVADSNAGDDSASQVSCGRPDFKLLLGEQQSDQAYVKLKICDVLDTTPDGVISLDPDFVPTYIQAHASSYLLSCLKEVISMLSHRGDTIAERIRSNGKVGGAEVGDFMMLQLINRTELLLRHYLGLEQVHPEELYRTLLTMLGDLATFSGESKRPRLDSRYSHADQGASFRKLMEAIRQVLSMVLEQHAIELILQARQYGIIVSPLHDHKLLGSASFVLAASANCDSEELRQRLPQHLKVGPVERIRQLVNLHLPGIKVKPLPVAPRQIAFHSNKTYFILELSSEDLAQLERSGGFAFHVSGEFAELELKFWAIRN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9951 - -


  Protein sequence: 444 a.a.    

>T6CP015315 KX941489:1-1332 [Pseudomonas fluorescens] [TssK]
MNTHKVIWQEGMLLRPQHFQHNDRYYDHQMKTRTQLLGGYTWGFLNLEIDLQFLNMGKLVISEASGILPDGSLFELGGNT
EPLALDVPPNTGNTPIYLALPLVTGNHIEARRPEQSDVLARYTAYDAEVADSNAGDDSASQVSCGRPDFKLLLGEQQSDQ
AYVKLKICDVLDTTPDGVISLDPDFVPTYIQAHASSYLLSCLKEVISMLSHRGDTIAERIRSNGKVGGAEVGDFMMLQLI
NRTELLLRHYLGLEQVHPEELYRTLLTMLGDLATFSGESKRPRLDSRYSHADQGASFRKLMEAIRQVLSMVLEQHAIELI
LQARQYGIIVSPLHDHKLLGSASFVLAASANCDSEELRQRLPQHLKVGPVERIRQLVNLHLPGIKVKPLPVAPRQIAFHS
NKTYFILELSSEDLAQLERSGGFAFHVSGEFAELELKFWAIRN*

  Nucleotide sequence: 1332 bp    

>T6CP015315 KX941489:1-1332 [Pseudomonas fluorescens] [TssK]
ATGAACACCCATAAAGTCATTTGGCAGGAAGGTATGCTGCTGCGACCGCAGCACTTCCAGCACAACGATCGTTATTACGA
TCACCAGATGAAAACCCGCACGCAATTGCTCGGTGGCTACACCTGGGGTTTTCTCAATCTGGAGATCGACTTGCAGTTCC
TCAACATGGGCAAACTGGTGATCAGTGAAGCCTCGGGGATTCTGCCGGACGGCAGTCTGTTCGAACTCGGTGGCAACACC
GAGCCGCTGGCGCTGGACGTGCCGCCGAACACCGGCAACACGCCGATCTATCTGGCGCTGCCGCTGGTCACCGGCAACCA
CATCGAGGCCCGGCGCCCGGAGCAATCCGACGTGCTCGCGCGCTACACCGCGTATGACGCCGAAGTCGCCGACTCCAACG
CCGGCGATGATTCCGCCAGCCAGGTCAGCTGCGGTCGTCCGGACTTCAAACTGTTGCTCGGCGAGCAGCAGAGCGATCAG
GCCTATGTGAAGCTGAAAATCTGCGACGTGCTCGATACCACGCCCGACGGCGTGATCAGCCTCGACCCGGATTTCGTCCC
GACCTACATTCAGGCCCACGCTTCCAGCTACCTGCTGTCGTGCCTGAAAGAAGTCATCAGCATGCTCAGCCACCGTGGCG
ACACCATCGCCGAGCGAATTCGCTCCAACGGCAAGGTCGGCGGCGCTGAAGTCGGCGACTTCATGATGCTGCAACTGATC
AACCGCACCGAACTGCTGCTGCGCCATTACCTGGGTCTTGAGCAGGTGCACCCGGAAGAGCTGTATCGCACGCTGCTGAC
CATGCTCGGCGATCTGGCGACCTTCTCTGGCGAGAGCAAACGCCCGCGCCTGGACAGCCGCTATTCCCACGCCGATCAGG
GCGCGAGCTTCCGCAAACTGATGGAAGCGATCCGTCAGGTGCTGTCGATGGTGCTCGAACAGCACGCCATCGAACTGATC
CTGCAGGCGCGTCAGTACGGCATCATCGTCTCGCCGTTGCACGATCACAAACTGCTCGGCTCGGCCTCGTTCGTGCTGGC
AGCCAGTGCCAACTGCGACTCCGAAGAACTGCGTCAGCGCTTGCCGCAGCACCTCAAGGTCGGCCCGGTGGAGCGCATCC
GCCAACTGGTCAACCTGCACTTGCCGGGGATCAAGGTCAAACCGTTGCCGGTGGCCCCACGGCAGATCGCGTTCCATTCG
AACAAAACCTATTTCATCCTCGAACTCAGTTCCGAAGACCTGGCACAACTCGAGCGCTCCGGCGGTTTCGCGTTCCACGT
GTCAGGCGAATTCGCCGAGCTTGAACTGAAATTCTGGGCCATCAGGAACTGA