Detailed information of component protein


Summary

Component ID T6CP015310
Component protein type TssH
T6SS ID (Type) T6SS01209 experimental (Type Unknown)
Strain Pseudomonas fluorescens strain MFE01
Replicon chromosome
Sequence Protein sequence (886 a.a.); Nucleotide sequence (2658 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 1..2658 (+)
NCBI ID AQM58475.1
GenBank KX941484
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 4.8e-43 619..784
AAA_lid_9 PF17871.3 4.1e-28 349..441
AAA PF00004.31 2.9e-10 209..340
ClpB_D2-small PF10431.11 1.4e-09 795..862
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-885 MINVDLQQLIQALDAETRRDLERSAERCVARGGSKILVEDLLLGLLERPNGLLSRALQDADVDAGELTAALQSRVEHSASRNPVFAPELVQWLQDALLVANLELGQTQVEDAALILALLRNPMRYAGSRYQPLLAKLNIDRLKEFALSQQEQPAANGKPAAQGESLLQRFTHNLTQQARDGKLDPVLCRDGAIRQMVDILARRRKNNPIVVGEAGVGKTAIVEGLASRIAAGEVPQVLKGVELLSLDMGLLQAGASVKGEFERRLKGVIDEVKASPKPIILFIDEAHTLIGAGGNAGGSDAANLLKPALARGELRTIAATTWAEYKKYFEKDPALARRFQPVQLHEPTVSEAVTILRGLAQVYEKSHGIYLRDDAVVSAAELSARYLAGRQLPDKAVDVLDTACARVRISLAAAPESLERLRGELAEGGRQRQALRRDAEAGLLIDHEALEALEARLDEAESEMVALETLWTEQKELAERLLELRQQLAKAREAAAVEPTVSVEEDSEGTVIETVVAEVEEGQSVEALEAQLHETHAALTAAQVKERLVSFEVCPRLVAEVISAWTGVPLAQLAREHNAKVASFATDLRTRIRGQEQAVHALDRSMRATAAGLNKPDAPVGVFLLVGPSGVGKTETALALADLLYGGDRFITTINMSEFQEKHTVSRLIGAPPGYVGYGEGGMLTEAVRQKPYSVVLLDEVEKADPDVLNLFYQIFDKGVANDGEGREIDFRNTLILMTSNLGSDKISELCEDGARPTAEVLEETIRPVLSKHFKPALLARMKVVPYYPVGGPVLRELIEIKLGRLGERLNRRQLDFSWCQNLVDHLSERCTQSESGARLIDHLLDQHVLPLVADRLLDAMATGESLKRVHATLDGNSSVTCEFA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9904 - -


  Protein sequence: 886 a.a.    

>T6CP015310 KX941484:1-2658 [Pseudomonas fluorescens] [TssH]
MINVDLQQLIQALDAETRRDLERSAERCVARGGSKILVEDLLLGLLERPNGLLSRALQDADVDAGELTAALQSRVEHSAS
RNPVFAPELVQWLQDALLVANLELGQTQVEDAALILALLRNPMRYAGSRYQPLLAKLNIDRLKEFALSQQEQPAANGKPA
AQGESLLQRFTHNLTQQARDGKLDPVLCRDGAIRQMVDILARRRKNNPIVVGEAGVGKTAIVEGLASRIAAGEVPQVLKG
VELLSLDMGLLQAGASVKGEFERRLKGVIDEVKASPKPIILFIDEAHTLIGAGGNAGGSDAANLLKPALARGELRTIAAT
TWAEYKKYFEKDPALARRFQPVQLHEPTVSEAVTILRGLAQVYEKSHGIYLRDDAVVSAAELSARYLAGRQLPDKAVDVL
DTACARVRISLAAAPESLERLRGELAEGGRQRQALRRDAEAGLLIDHEALEALEARLDEAESEMVALETLWTEQKELAER
LLELRQQLAKAREAAAVEPTVSVEEDSEGTVIETVVAEVEEGQSVEALEAQLHETHAALTAAQVKERLVSFEVCPRLVAE
VISAWTGVPLAQLAREHNAKVASFATDLRTRIRGQEQAVHALDRSMRATAAGLNKPDAPVGVFLLVGPSGVGKTETALAL
ADLLYGGDRFITTINMSEFQEKHTVSRLIGAPPGYVGYGEGGMLTEAVRQKPYSVVLLDEVEKADPDVLNLFYQIFDKGV
ANDGEGREIDFRNTLILMTSNLGSDKISELCEDGARPTAEVLEETIRPVLSKHFKPALLARMKVVPYYPVGGPVLRELIE
IKLGRLGERLNRRQLDFSWCQNLVDHLSERCTQSESGARLIDHLLDQHVLPLVADRLLDAMATGESLKRVHATLDGNSSV
TCEFA*

  Nucleotide sequence: 2658 bp    

>T6CP015310 KX941484:1-2658 [Pseudomonas fluorescens] [TssH]
ATGATCAACGTAGACCTGCAACAACTCATCCAGGCGCTGGACGCCGAAACCCGTCGTGATCTGGAACGTTCGGCCGAGCG
TTGCGTCGCCCGTGGCGGCAGTAAGATTCTGGTCGAAGACTTGCTGCTGGGCTTGCTCGAGCGCCCGAACGGCTTGCTGT
CGCGCGCCCTGCAAGATGCTGACGTCGACGCCGGTGAACTGACCGCTGCATTGCAGTCGCGGGTCGAGCACAGCGCTTCG
CGCAACCCGGTCTTTGCTCCTGAATTGGTGCAATGGCTGCAAGACGCGCTGCTGGTGGCCAACCTCGAACTGGGCCAGAC
CCAGGTCGAAGACGCCGCGCTGATCCTGGCGTTGCTGCGCAATCCGATGCGTTATGCCGGTAGCCGCTATCAACCGCTGC
TCGCCAAGCTGAACATCGATCGCCTGAAAGAATTTGCGCTGTCGCAACAAGAGCAACCGGCGGCTAACGGCAAACCGGCG
GCGCAGGGCGAGTCGCTGTTGCAGCGCTTCACCCACAACCTGACCCAACAGGCCCGCGACGGCAAACTCGACCCGGTGCT
GTGCCGTGACGGCGCGATCCGGCAGATGGTCGACATCCTCGCCCGTCGGCGCAAGAACAACCCGATCGTCGTCGGTGAGG
CCGGTGTCGGCAAGACCGCGATCGTCGAAGGTCTGGCTTCGCGCATCGCTGCCGGTGAAGTGCCGCAGGTACTCAAAGGC
GTTGAATTGCTCTCGCTGGACATGGGCCTGTTGCAGGCCGGCGCCAGCGTCAAAGGTGAATTCGAGCGTCGTTTGAAAGG
CGTGATCGACGAGGTCAAAGCCTCGCCGAAACCGATCATCCTGTTCATCGACGAAGCCCACACGCTGATCGGCGCGGGCG
GCAATGCCGGCGGTTCCGATGCGGCCAACCTGCTGAAGCCGGCGCTGGCCCGTGGCGAACTGCGCACGATCGCCGCGACC
ACCTGGGCCGAGTACAAGAAATACTTCGAGAAAGACCCGGCGCTGGCCCGTCGCTTCCAGCCCGTGCAACTGCACGAACC
GACTGTCAGCGAAGCGGTGACCATTCTGCGTGGTCTGGCTCAGGTCTACGAGAAAAGCCACGGCATCTATCTGCGCGATG
ACGCGGTGGTGTCCGCTGCTGAATTGTCCGCGCGTTACCTGGCCGGTCGGCAACTGCCGGACAAGGCCGTCGACGTCCTC
GACACCGCGTGCGCCCGCGTGCGCATCAGCCTCGCTGCGGCCCCGGAAAGTCTCGAGCGCCTGCGTGGCGAACTGGCTGA
AGGCGGCCGTCAGCGTCAGGCCCTGCGCCGCGATGCCGAGGCCGGTCTGCTGATCGACCACGAAGCGCTGGAAGCACTGG
AAGCGCGTCTGGACGAAGCCGAAAGCGAGATGGTTGCGCTCGAGACCCTGTGGACTGAGCAGAAAGAGCTGGCCGAGCGT
CTGCTGGAACTGCGTCAGCAACTGGCCAAGGCTCGCGAAGCCGCAGCCGTCGAGCCGACCGTCAGCGTGGAAGAAGACTC
CGAAGGCACCGTGATTGAAACTGTGGTCGCCGAAGTCGAAGAAGGCCAAAGCGTCGAAGCGCTGGAAGCCCAATTGCATG
AAACCCACGCCGCGTTGACCGCTGCGCAAGTCAAAGAACGCCTGGTCAGCTTCGAAGTGTGCCCGCGTCTGGTCGCCGAA
GTGATCAGCGCCTGGACCGGCGTGCCATTGGCGCAACTGGCCCGCGAGCACAACGCCAAGGTCGCCAGTTTCGCCACCGA
CCTGCGCACACGCATCCGTGGTCAGGAGCAAGCCGTGCACGCGCTGGATCGTTCGATGCGCGCAACCGCTGCCGGTCTGA
ACAAGCCTGATGCACCGGTCGGTGTGTTCCTGCTGGTCGGCCCGAGCGGCGTCGGCAAGACCGAAACCGCGCTGGCCCTG
GCTGACCTGCTGTACGGCGGCGACCGCTTCATCACCACCATCAACATGTCCGAGTTCCAGGAGAAGCACACCGTCTCGCG
TCTGATCGGCGCGCCACCGGGCTACGTCGGTTACGGCGAGGGCGGCATGCTCACCGAAGCCGTGCGTCAGAAGCCGTATT
CGGTGGTGCTGCTCGATGAAGTCGAGAAGGCTGATCCGGACGTGCTCAACCTGTTCTACCAAATCTTCGACAAAGGCGTG
GCCAACGACGGCGAAGGTCGCGAGATCGACTTCCGTAATACGTTGATCCTGATGACCTCCAACCTTGGCAGCGACAAGAT
CAGCGAGCTCTGCGAAGACGGCGCGCGGCCGACCGCCGAAGTGCTCGAAGAAACCATTCGCCCGGTGCTCAGCAAACACT
TCAAACCGGCGCTGCTGGCGCGGATGAAAGTGGTGCCGTACTACCCGGTGGGCGGGCCGGTGCTGCGCGAGCTGATCGAA
ATCAAACTCGGCCGTCTCGGCGAGCGCCTGAACCGTCGTCAGCTGGACTTCAGCTGGTGCCAGAACCTCGTCGATCACCT
GTCCGAGCGTTGCACGCAAAGCGAAAGCGGTGCGCGCCTGATCGATCATCTGCTCGATCAACACGTGCTGCCGTTGGTGG
CCGATCGTCTGCTCGATGCGATGGCGACCGGCGAAAGCCTCAAGCGTGTGCATGCCACGCTCGACGGCAACTCCAGCGTG
ACCTGCGAGTTCGCCTGA