Detailed information of component protein


Summary

Component ID T6CP015322
Component protein type TssI
T6SS ID (Type) T6SS01209 experimental (Type Unknown)
Strain Pseudomonas fluorescens strain MFE01
Replicon chromosome
Sequence Protein sequence (449 a.a.); Nucleotide sequence (1347 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 1..1347 (+)
NCBI ID AQM58487.1
GenBank KX941496
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 2.1e-38 29..221
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-448 MFDPVNEPSFRLDVAGLSDPFEVLAFTGREALSEPFAFEIDVVIDDPHLDLAGLLHRSAFLCFGAPDQGVHGQLHSLVQHEHGHGLRLCRVRLGPRLDCLDLRLSQRIFSGRCVPQIIEQVLREHGIVGLQRRYELHSDYPARTFCTQYRESDLQLLQRLCAEARIHYYFEHHRDRHCLVFGDDPTRMPHADVAHYQGEHDQRGVAPAVRQWQLHEDSQASQRGPDAEGHSDLPALRSGQWLPLDDHPFIECNRPWLLTRIEHRADQSLEPPYCNRLFAAARVPVCAPAAAQSKQRMHSLQRAWVVSVDEPQPDCSRPVAVQFDWLYQGEGAAPSHCWLPLTPDLNELPSAALADGVEVVVSFLEGDPDQPVVSGVLQPSVLPEAAVENDEPVSLPELLASDGLQQLLQSGEPLLLLCLMPGGGSFNHCAESVCSCRLLTALDQSSAR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9943 - -


  Protein sequence: 449 a.a.    

>T6CP015322 KX941496:1-1347 [Pseudomonas fluorescens] [TssI]
MFDPVNEPSFRLDVAGLSDPFEVLAFTGREALSEPFAFEIDVVIDDPHLDLAGLLHRSAFLCFGAPDQGVHGQLHSLVQH
EHGHGLRLCRVRLGPRLDCLDLRLSQRIFSGRCVPQIIEQVLREHGIVGLQRRYELHSDYPARTFCTQYRESDLQLLQRL
CAEARIHYYFEHHRDRHCLVFGDDPTRMPHADVAHYQGEHDQRGVAPAVRQWQLHEDSQASQRGPDAEGHSDLPALRSGQ
WLPLDDHPFIECNRPWLLTRIEHRADQSLEPPYCNRLFAAARVPVCAPAAAQSKQRMHSLQRAWVVSVDEPQPDCSRPVA
VQFDWLYQGEGAAPSHCWLPLTPDLNELPSAALADGVEVVVSFLEGDPDQPVVSGVLQPSVLPEAAVENDEPVSLPELLA
SDGLQQLLQSGEPLLLLCLMPGGGSFNHCAESVCSCRLLTALDQSSAR*

  Nucleotide sequence: 1347 bp    

>T6CP015322 KX941496:1-1347 [Pseudomonas fluorescens] [TssI]
ATGTTCGATCCAGTCAACGAGCCGTCGTTTCGTCTCGATGTAGCGGGCCTGTCCGACCCCTTCGAAGTTCTCGCCTTTAC
CGGAAGGGAAGCGCTCAGCGAACCCTTCGCCTTCGAGATCGATGTGGTGATCGACGATCCGCATCTGGATCTCGCCGGCC
TGCTGCACCGTTCCGCGTTCCTGTGTTTCGGCGCGCCCGACCAGGGTGTGCACGGGCAACTGCACAGCCTTGTCCAGCAC
GAGCACGGCCATGGCTTGCGTTTGTGCCGAGTACGTCTCGGGCCTAGGCTCGACTGCCTCGACCTGCGTTTGAGCCAGCG
CATCTTCAGCGGCCGCTGCGTGCCGCAGATCATCGAACAGGTGCTGCGCGAACATGGCATCGTCGGCCTGCAGCGACGTT
ACGAGTTGCACAGCGACTACCCGGCCCGCACCTTCTGCACGCAGTACCGCGAATCCGATCTGCAACTGCTCCAGCGCCTG
TGCGCAGAGGCGCGCATTCACTATTACTTCGAACATCACCGCGACAGGCACTGCCTGGTGTTCGGCGACGATCCGACGCG
GATGCCCCATGCAGATGTCGCGCACTATCAGGGCGAGCATGACCAGCGTGGCGTCGCTCCAGCCGTCCGCCAATGGCAAC
TGCACGAAGACTCGCAGGCCAGCCAGCGAGGCCCCGATGCCGAAGGCCACAGCGATCTGCCCGCCTTGCGCAGCGGTCAG
TGGTTGCCCCTGGACGACCATCCTTTCATCGAATGCAACCGCCCATGGTTGCTGACCCGCATCGAACACCGGGCCGATCA
ATCTCTCGAACCGCCCTATTGCAATCGCCTGTTCGCGGCCGCGCGGGTACCCGTCTGTGCGCCCGCCGCTGCGCAGTCCA
AACAGCGCATGCACAGCCTGCAGCGAGCCTGGGTGGTCAGCGTCGATGAGCCGCAGCCGGATTGCTCGCGGCCGGTGGCG
GTGCAATTCGACTGGCTCTACCAGGGCGAAGGCGCAGCGCCGAGCCATTGCTGGCTGCCCCTCACGCCTGACCTGAACGA
GCTGCCCTCGGCGGCACTCGCCGATGGCGTGGAAGTGGTGGTGAGTTTCCTCGAAGGCGATCCCGATCAGCCGGTGGTCA
GTGGCGTGCTCCAGCCCTCAGTGTTGCCAGAGGCTGCGGTCGAGAACGATGAACCGGTATCGCTCCCAGAATTGCTGGCG
AGCGATGGGTTGCAGCAACTGTTGCAGTCTGGCGAGCCGTTGCTGTTGCTGTGCCTGATGCCGGGCGGTGGCAGCTTCAA
CCACTGCGCCGAGTCCGTGTGCAGTTGCCGGCTGCTCACCGCGCTTGATCAGAGCAGCGCACGATGA