SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP015321
Component protein type	TssD
T6SS ID (Type)	T6SS01209 (Type Unknown)
Strain	Pseudomonas fluorescens strain MFE01
Replicon	chromosome
Sequence	Protein sequence (169 a.a.); Nucleotide sequence (507 bp)
Reference	[1] Decoin V, Barbey C, Bergeau D, et al. A type VI secretion system is involved in Pseudomonas fluorescens bacterial competition. PLoS One. 2014 Feb 14;9(2):e89411. doi: 10.1371/journal.pone.0089411. eCollection 2014. PMID: 24551247 [2] Decoin V, Gallique M, Barbey C, et al. A Pseudomonas fluorescens type 6 secretion system is related to mucoidy, motility and bacterial competition. BMC Microbiol. 2015 Mar 26;15:72. doi: 10.1186/s12866-015-0405-9. PMID: 25886496

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	-
Coordinate (Strand)	1..507 (+)
NCBI ID	AQM58486.1
GenBank	KX941495
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_HCP	PF05638.14	3.8e-25	7..151

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-168	MPIPAFMTIHGSRQGLITAGAFTEASVGNGYQSGREDKIMVQALSHGMYIPKDQGAGRRMHRPLIITKTLDKASPLLNMALSSVELLSECRVEFYRTSASGVQEHFYTVELEDALVVGSELLMPNCLDTATSHLTQLEKVHFSYRRIYWRHEISRTMGSDEWQGEGLR

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.7926	-	-

Protein sequence: 169 a.a.

						>T6CP015321 KX941495:1-507 [Pseudomonas fluorescens] [TssD]
MPIPAFMTIHGSRQGLITAGAFTEASVGNGYQSGREDKIMVQALSHGMYIPKDQGAGRRMHRPLIITKTLDKASPLLNMA
LSSVELLSECRVEFYRTSASGVQEHFYTVELEDALVVGSELLMPNCLDTATSHLTQLEKVHFSYRRIYWRHEISRTMGSD
EWQGEGLR*					

Nucleotide sequence: 507 bp

						>T6CP015321 KX941495:1-507 [Pseudomonas fluorescens] [TssD]
ATGCCCATCCCAGCCTTCATGACCATCCACGGCAGCCGCCAAGGCCTGATCACCGCCGGCGCTTTCACCGAGGCGTCGGT
CGGTAACGGCTACCAGAGCGGGCGCGAAGACAAGATCATGGTGCAGGCCCTCAGCCATGGCATGTACATACCCAAGGATC
AGGGCGCCGGGCGGCGGATGCACAGGCCATTGATCATCACCAAAACCCTCGACAAGGCTTCGCCCTTGCTGAATATGGCG
CTGTCCAGCGTCGAGTTGCTGAGCGAATGCCGCGTGGAGTTTTATCGCACGTCGGCCAGCGGCGTGCAGGAGCACTTCTA
CACGGTGGAGCTGGAGGATGCGTTGGTCGTCGGCAGCGAACTATTGATGCCGAACTGTCTCGACACGGCCACGTCGCATC
TCACCCAACTGGAGAAAGTCCACTTCAGCTACCGGCGCATCTACTGGCGCCACGAAATCAGCCGGACGATGGGTTCGGAC
GAGTGGCAAGGCGAGGGACTTCGGTGA					