Detailed information of component protein


Summary

Component ID T6CP015311
Component protein type Sfa2
T6SS ID (Type) T6SS01209 experimental (Type Unknown)
Strain Pseudomonas fluorescens strain MFE01
Replicon chromosome
Sequence Protein sequence (507 a.a.); Nucleotide sequence (1521 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 1..1521 (+)
NCBI ID AQM58476.1
GenBank KX941485
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Sigma54_activat PF00158.28 2e-69 196..363
HTH_8 PF02954.21 3.5e-12 457..496
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-506 MFTQVPQPLVYAEALLAQFASLSRAADSAALLSEFVRGLAELSGCELTQLYLLDATHTCLGMNAECLDGALQPRQAASLPADYNGEQLLQFALCQNRVVCLDDLTGSLHETSFLPATSTPWQSLLCVPLVNQHKSVEGLLLCASRRRTDLQGFADSLGQLGSFVLGQLHLLQRLRQPAAESATATRSVPSISGYGLIGKSAAMRQTYSLISKILHSPYTVLLRGETGTGKEVVARAIHDCGPRRSQAFIVQNCAAFPENLLESELFGYRKGAFTGADRDRAGLFDAANGGTLLLDEIGDMPLSLQAKILRVLQEGEIRPLGSNDTHKIDVRIIAATHRDLAALVSEGKFREDLYYRLKQFPIELPALRQREGDILDLARHFAEKTCTFLQRDPVRWSDSALEHLCGYTFPGNVRELKALVERAVLLCEGGELLAEHFSLRLEAMPEDNSGLNLRERLEQVERTLLLDCLRKNDGNQTLAARELGLPRRTLLYRLGRLNINLGDFDG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.7193 - -


  Protein sequence: 507 a.a.    

>T6CP015311 KX941485:1-1521 [Pseudomonas fluorescens] [Sfa2]
MFTQVPQPLVYAEALLAQFASLSRAADSAALLSEFVRGLAELSGCELTQLYLLDATHTCLGMNAECLDGALQPRQAASLP
ADYNGEQLLQFALCQNRVVCLDDLTGSLHETSFLPATSTPWQSLLCVPLVNQHKSVEGLLLCASRRRTDLQGFADSLGQL
GSFVLGQLHLLQRLRQPAAESATATRSVPSISGYGLIGKSAAMRQTYSLISKILHSPYTVLLRGETGTGKEVVARAIHDC
GPRRSQAFIVQNCAAFPENLLESELFGYRKGAFTGADRDRAGLFDAANGGTLLLDEIGDMPLSLQAKILRVLQEGEIRPL
GSNDTHKIDVRIIAATHRDLAALVSEGKFREDLYYRLKQFPIELPALRQREGDILDLARHFAEKTCTFLQRDPVRWSDSA
LEHLCGYTFPGNVRELKALVERAVLLCEGGELLAEHFSLRLEAMPEDNSGLNLRERLEQVERTLLLDCLRKNDGNQTLAA
RELGLPRRTLLYRLGRLNINLGDFDG*

  Nucleotide sequence: 1521 bp    

>T6CP015311 KX941485:1-1521 [Pseudomonas fluorescens] [Sfa2]
ATGTTCACTCAAGTGCCGCAGCCACTGGTCTATGCCGAAGCGTTGCTGGCGCAGTTCGCCAGTCTGTCGCGGGCGGCGGA
CAGTGCTGCGCTGCTGAGTGAGTTCGTCCGTGGCCTGGCCGAGCTGAGTGGCTGCGAACTGACTCAGCTGTATCTGCTCG
ATGCCACCCACACCTGCCTGGGGATGAACGCCGAGTGCCTCGACGGCGCGCTGCAACCGCGTCAGGCGGCGAGCCTGCCG
GCGGATTACAACGGTGAACAACTGCTGCAATTTGCCCTGTGCCAGAACCGCGTGGTGTGCCTCGACGACCTGACCGGCAG
CCTGCACGAAACCAGTTTTCTGCCGGCGACAAGCACGCCGTGGCAGTCGCTGTTGTGCGTGCCGCTGGTCAATCAGCACA
AGTCGGTTGAGGGCTTGTTGCTGTGTGCCAGTCGCCGTCGCACTGACTTGCAGGGTTTCGCCGACTCCCTCGGCCAGCTC
GGCTCGTTCGTGCTCGGCCAACTGCATCTGCTGCAACGCCTGCGTCAGCCAGCCGCCGAATCGGCCACCGCCACTCGCAG
CGTGCCGAGCATCAGCGGCTACGGCCTGATCGGCAAAAGCGCGGCGATGCGCCAGACCTATTCGCTGATCAGCAAGATCC
TCCACAGCCCTTATACCGTGCTGTTGCGTGGCGAGACAGGCACCGGCAAGGAAGTGGTGGCACGGGCGATTCACGATTGT
GGTCCGCGTCGCTCCCAGGCGTTCATCGTGCAGAACTGCGCGGCGTTCCCGGAAAACCTGCTGGAAAGCGAACTGTTCGG
CTACCGCAAAGGCGCTTTCACCGGCGCCGATCGAGATCGCGCAGGGCTGTTCGACGCGGCCAATGGCGGCACGTTGTTGC
TGGATGAAATCGGCGACATGCCGTTGTCGCTGCAAGCGAAGATTCTGCGTGTGTTGCAGGAAGGCGAGATCCGTCCGCTG
GGTTCCAACGACACGCACAAGATCGACGTGCGCATCATCGCCGCGACGCACCGTGATCTGGCGGCACTGGTCAGCGAAGG
CAAGTTCCGCGAGGACTTGTATTACCGCCTCAAGCAGTTCCCGATCGAGCTGCCGGCTCTGCGTCAGCGCGAAGGCGACA
TTCTCGATCTGGCCCGGCATTTCGCCGAGAAGACCTGCACCTTTCTGCAGCGTGACCCGGTGCGGTGGTCGGACTCGGCG
CTGGAGCATCTGTGCGGTTACACCTTCCCCGGCAACGTTCGCGAACTCAAGGCACTGGTCGAGCGCGCGGTGTTGCTCTG
CGAGGGCGGCGAGTTGCTCGCCGAGCATTTTTCTCTGCGCCTGGAAGCGATGCCGGAAGACAACAGCGGCCTGAATCTGC
GCGAACGGCTGGAGCAGGTCGAGCGCACTTTGCTCCTCGATTGCCTGCGCAAGAACGACGGCAACCAGACCCTCGCCGCC
CGCGAACTGGGCCTGCCGCGGCGCACGCTGCTTTACCGCCTCGGGCGCCTGAATATCAATTTGGGTGACTTTGATGGTTG
A