Detailed information of component protein


Summary

Component ID T6CP015320
Component protein type TssI
T6SS ID (Type) T6SS01209 experimental (Type Unknown)
Strain Pseudomonas fluorescens strain MFE01
Replicon chromosome
Sequence Protein sequence (679 a.a.); Nucleotide sequence (2037 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 1..2037 (+)
NCBI ID AQM58485.1
GenBank KX941494
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 2.7e-73 29..326
Phage_base_V PF04717.14 7.9e-15 392..459
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-678 MFNSANETHFSLKVEDYVGDLQVLSFTGTEGISQAYRFDLELVSENPDLDLEQLLHKQAFLAFDPQGSGIHGQIYRVAQGDAGKRLTRYKVSIVPQLQYLHHRTNQRIYQQMSAPKIIALILEEHGIKSNAYSFQLSQPCPDRDYCVQYDETDLHFVQRLCEEEGIHYHFQHSEKAHLLVFGDDQTVFQNLGQPTAYVQGSGMVADEPVIKAFKLRLETRTTRTTRRDYDFEKPRLRMEAAYKPDGDSTEPDLEDYDYPGRFIDRARGKFLSQRALERHRADYRQAEGRGDQTKLVSGHFMEMSDHPRSEWNDLWLLTEIVHEGKQPQVLEEGVTSDTTDNKDDFHQGYRNTFLATPWDVFYRPALEHPKPRVLGSQTAMVTGPKGEEIHCDQYGRIKVQFHWDREGQADDKTSCWLRVSSSWAGDRYGAISIPRIGMEVLVTFLEGDPDQPLVTGCLYHKENPVPYALPANKTRSVFKTLSSPGGGGYNELRIEDKKGAEQIYIHAQRDWDENVEHDQKIRVGNERHDTVVKNTYTELKAEEHRTTISDRKIEAKLDDHLTIGQNQHVKLGTAQLTSVGKEIHLKAGDKIVIEAGTELTILGGGSFIKLDGGGVTVVGPVIKINAGGSAGSGTGIGIKPPVLPGAADKDKAGSLMDQALLNAPPEKVKPKAFFVFSE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9935 - -


  Protein sequence: 679 a.a.    

>T6CP015320 KX941494:1-2037 [Pseudomonas fluorescens] [TssI]
MFNSANETHFSLKVEDYVGDLQVLSFTGTEGISQAYRFDLELVSENPDLDLEQLLHKQAFLAFDPQGSGIHGQIYRVAQG
DAGKRLTRYKVSIVPQLQYLHHRTNQRIYQQMSAPKIIALILEEHGIKSNAYSFQLSQPCPDRDYCVQYDETDLHFVQRL
CEEEGIHYHFQHSEKAHLLVFGDDQTVFQNLGQPTAYVQGSGMVADEPVIKAFKLRLETRTTRTTRRDYDFEKPRLRMEA
AYKPDGDSTEPDLEDYDYPGRFIDRARGKFLSQRALERHRADYRQAEGRGDQTKLVSGHFMEMSDHPRSEWNDLWLLTEI
VHEGKQPQVLEEGVTSDTTDNKDDFHQGYRNTFLATPWDVFYRPALEHPKPRVLGSQTAMVTGPKGEEIHCDQYGRIKVQ
FHWDREGQADDKTSCWLRVSSSWAGDRYGAISIPRIGMEVLVTFLEGDPDQPLVTGCLYHKENPVPYALPANKTRSVFKT
LSSPGGGGYNELRIEDKKGAEQIYIHAQRDWDENVEHDQKIRVGNERHDTVVKNTYTELKAEEHRTTISDRKIEAKLDDH
LTIGQNQHVKLGTAQLTSVGKEIHLKAGDKIVIEAGTELTILGGGSFIKLDGGGVTVVGPVIKINAGGSAGSGTGIGIKP
PVLPGAADKDKAGSLMDQALLNAPPEKVKPKAFFVFSE*

  Nucleotide sequence: 2037 bp    

>T6CP015320 KX941494:1-2037 [Pseudomonas fluorescens] [TssI]
ATGTTCAACTCAGCTAACGAAACCCACTTCAGCCTCAAGGTCGAAGACTACGTCGGCGACCTGCAAGTGCTGTCGTTCAC
CGGCACCGAAGGCATCAGCCAGGCGTATCGCTTCGACCTCGAGCTGGTCAGCGAAAACCCCGATCTGGACCTCGAACAAC
TGCTGCACAAGCAGGCGTTTCTCGCATTCGATCCACAGGGCTCGGGCATTCACGGGCAGATCTACCGCGTCGCCCAGGGC
GATGCCGGCAAGCGCCTGACCCGCTACAAAGTCTCGATCGTGCCGCAACTGCAATACCTGCATCACCGCACCAACCAGCG
CATCTACCAGCAGATGTCGGCGCCGAAGATCATCGCGCTGATCCTCGAAGAGCACGGCATCAAGAGCAACGCCTACAGCT
TCCAGCTCAGCCAGCCGTGCCCGGATCGCGACTACTGCGTGCAGTACGACGAAACCGACCTGCATTTCGTCCAGCGCCTG
TGCGAAGAAGAAGGCATCCACTACCACTTCCAGCACAGCGAAAAGGCCCACCTGCTGGTGTTCGGCGACGACCAGACCGT
GTTCCAGAACCTTGGGCAGCCAACTGCTTATGTGCAGGGCAGCGGCATGGTCGCCGACGAGCCGGTGATCAAAGCCTTCA
AACTGCGTCTGGAAACCCGCACCACGCGCACCACGCGCCGCGACTACGATTTCGAAAAACCGCGCCTGCGAATGGAAGCC
GCGTACAAACCGGACGGCGACAGCACTGAACCGGATCTCGAAGATTACGACTACCCGGGCCGCTTCATCGACCGCGCGCG
CGGCAAGTTCCTCAGCCAGCGCGCCCTCGAACGCCATCGCGCCGACTACCGTCAGGCCGAAGGTCGCGGCGACCAGACCA
AACTGGTCAGCGGCCACTTCATGGAAATGTCCGACCACCCGCGCAGCGAGTGGAACGACCTGTGGCTGCTCACCGAAATC
GTCCACGAAGGCAAACAGCCGCAAGTCCTCGAAGAAGGCGTGACCAGCGACACCACCGACAACAAAGACGACTTCCACCA
GGGCTATCGCAACACCTTTCTCGCCACTCCGTGGGACGTGTTCTACCGCCCGGCCCTCGAACACCCGAAACCACGCGTAC
TCGGCAGCCAGACCGCCATGGTCACCGGCCCCAAAGGCGAAGAAATCCACTGCGACCAGTACGGCCGCATCAAGGTGCAA
TTCCACTGGGACCGCGAAGGCCAGGCCGACGACAAAACCAGCTGCTGGCTGCGCGTCTCCAGCTCCTGGGCCGGCGACCG
CTATGGCGCCATCAGCATCCCGCGCATCGGCATGGAAGTCCTCGTCACCTTCCTCGAAGGCGACCCCGACCAGCCCCTCG
TCACCGGTTGCCTGTACCACAAGGAAAACCCGGTGCCGTATGCCTTGCCGGCGAACAAGACGCGCAGCGTGTTCAAGACG
CTTAGCTCACCGGGTGGCGGTGGGTACAACGAACTGCGTATTGAAGACAAGAAAGGTGCGGAGCAGATCTACATTCATGC
GCAGCGCGATTGGGATGAAAACGTTGAGCACGACCAGAAGATTCGGGTCGGTAATGAGCGTCATGACACGGTGGTGAAGA
ACACCTATACCGAGCTGAAGGCTGAAGAACACCGCACCACTATCAGCGACCGCAAGATTGAAGCGAAGCTGGATGATCAC
CTGACGATTGGGCAGAACCAGCATGTGAAGCTGGGCACGGCGCAGCTGACCAGCGTGGGGAAAGAGATTCACCTTAAGGC
TGGGGACAAGATTGTTATTGAGGCCGGTACGGAGCTGACCATTCTTGGGGGTGGGAGCTTTATCAAGCTCGATGGCGGTG
GGGTGACGGTGGTTGGGCCGGTGATCAAGATCAATGCGGGTGGTTCGGCTGGTTCCGGCACCGGGATCGGGATTAAACCG
CCGGTGCTGCCGGGGGCGGCGGACAAGGATAAGGCGGGGAGTTTGATGGATCAGGCGTTGTTGAATGCGCCGCCTGAGAA
GGTTAAGCCGAAGGCTTTTTTTGTGTTTTCTGAGTGA