Detailed information of component protein


Summary

Component ID T6CP015320
Component protein type TssI
T6SS ID (Type) T6SS01209 experimental (Type Unknown)
Strain Pseudomonas fluorescens strain MFE01
Replicon chromosome
Sequence Protein sequence (679 a.a.); Nucleotide sequence (2037 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene)
Coordinate (Strand) 1..2037 (+)
NCBI ID AQM58485.1
GenBank KX941494
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-678 MFNSANETHFSLKVEDYVGDLQVLSFTGTEGISQAYRFDLELVSENPDLDLEQLLHKQAFLAFDPQGSGIHGQIYRVAQGDAGKRLTRYKVSIVPQLQYLHHRTNQRIYQQMSAPKIIALILEEHGIKSNAYSFQLSQPCPDRDYCVQYDETDLHFVQRLCEEEGIHYHFQHSEKAHLLVFGDDQTVFQNLGQPTAYVQGSGMVADEPVIKAFKLRLETRTTRTTRRDYDFEKPRLRMEAAYKPDGDSTEPDLEDYDYPGRFIDRARGKFLSQRALERHRADYRQAEGRGDQTKLVSGHFMEMSDHPRSEWNDLWLLTEIVHEGKQPQVLEEGVTSDTTDNKDDFHQGYRNTFLATPWDVFYRPALEHPKPRVLGSQTAMVTGPKGEEIHCDQYGRIKVQFHWDREGQADDKTSCWLRVSSSWAGDRYGAISIPRIGMEVLVTFLEGDPDQPLVTGCLYHKENPVPYALPANKTRSVFKTLSSPGGGGYNELRIEDKKGAEQIYIHAQRDWDENVEHDQKIRVGNERHDTVVKNTYTELKAEEHRTTISDRKIEAKLDDHLTIGQNQHVKLGTAQLTSVGKEIHLKAGDKIVIEAGTELTILGGGSFIKLDGGGVTVVGPVIKINAGGSAGSGTGIGIKPPVLPGAADKDKAGSLMDQALLNAPPEKVKPKAFFVFSE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9935 - -


  Protein sequence: 679 a.a.    


  Nucleotide sequence: 2037 bp