Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00252  |
| T6SS type | Type i4b |
| Strain | Pseudomonas putida GB-1 |
| Replicon (RefSeq) | chromosome (NC_010322) |
| Location | 3094169..3120406 |
| Function | - |
| Comment | - |
| References | [1] Barret M et al (2011) Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncovered. Microbiology. 157(Pt 6):1726-39. [PudMed:21474537] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | PAAR | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 |
Loading, please wait
Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| PPUTGB1_RS14020 | 3090312..3091458 | - | 1147 | pseudogene | RHS repeat protein | ||
| PPUTGB1_RS14025 | 3091606..3092325 | - | 720 | WP_012272390.1 | hypothetical protein | ||
| T6CP011642 | PAAR | PPUTGB1_RS27950 | 3092337..3093557 | - | 1221 | WP_012272391.1 | PAAR domain-containing protein |
| PPUTGB1_RS14035 | 3093554..3094147 | - | 594 | WP_012272392.1 | DcrB-related protein | ||
| T6CP002483 | TssI | PPUTGB1_RS14040 (tssI) | 3094169..3096010 | - | 1842 | WP_012272393.1 | type VI secretion system tip protein VgrG |
| PPUTGB1_RS14045 | 3096203..3097318 | - | 1116 | WP_012272394.1 | ADP-ribosylglycohydrolase family protein | ||
| PPUTGB1_RS14050 | 3097315..3098802 | - | 1488 | WP_012272395.1 | hypothetical protein | ||
| PPUTGB1_RS14055 | 3099710..3100459 | + | 750 | WP_012272396.1 | hypothetical protein | ||
| T6CP002484 | TssB | PPUTGB1_RS14060 (tssB) | 3100524..3101063 | + | 540 | WP_012272397.1 | type VI secretion system contractile sheath small subunit |
| T6CP002485 | TssC | PPUTGB1_RS14065 (tssC) | 3101078..3102580 | + | 1503 | WP_012272398.1 | type VI secretion system contractile sheath large subunit |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.
Loading, please wait
Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
Loading, please wait
Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
Loading, please wait
Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| IMU00331 | PPUTGB1_RS14045 (Tri1) | EFF01495 | Pseudomonas putida GB-1 | chromosome (NC_010322) | 3096203..3097318 (-) | 501229376 |
Showing 1 to 1 of 1 rows
Experimental investigation has been performed.
Loading, please wait
Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||