Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00252  |
| T6SS type | Type i4b |
| Strain | Pseudomonas putida GB-1 |
| Replicon (RefSeq) | chromosome (NC_010322) |
| Location | 3094169..3120406 |
| Function | - |
| Comment | - |
| References | [1] Barret M et al (2011) Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncovered. Microbiology. 157(Pt 6):1726-39. [PudMed:21474537] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | PAAR | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| PPUTGB1_RS14020 | 3090312..3091458 | - | 1147 | pseudogene | RHS repeat protein | ||
| PPUTGB1_RS14025 | 3091606..3092325 | - | 720 | WP_012272390.1 | hypothetical protein | ||
| T6CP011642 | PAAR | PPUTGB1_RS27950 | 3092337..3093557 | - | 1221 | WP_012272391.1 | PAAR domain-containing protein |
| PPUTGB1_RS14035 | 3093554..3094147 | - | 594 | WP_012272392.1 | DcrB-related protein | ||
| T6CP002483 | TssI | PPUTGB1_RS14040 (tssI) | 3094169..3096010 | - | 1842 | WP_012272393.1 | type VI secretion system tip protein VgrG |
| PPUTGB1_RS14045 | 3096203..3097318 | - | 1116 | WP_012272394.1 | ADP-ribosylglycohydrolase family protein | ||
| PPUTGB1_RS14050 | 3097315..3098802 | - | 1488 | WP_012272395.1 | hypothetical protein | ||
| PPUTGB1_RS14055 | 3099710..3100459 | + | 750 | WP_012272396.1 | hypothetical protein | ||
| T6CP002484 | TssB | PPUTGB1_RS14060 (tssB) | 3100524..3101063 | + | 540 | WP_012272397.1 | type VI secretion system contractile sheath small subunit |
| T6CP002485 | TssC | PPUTGB1_RS14065 (tssC) | 3101078..3102580 | + | 1503 | WP_012272398.1 | type VI secretion system contractile sheath large subunit |
| T6CP002486 | TssE | PPUTGB1_RS14070 (tssE) | 3102607..3103089 | + | 483 | WP_012272399.1 | type VI secretion system baseplate subunit TssE |
| T6CP002487 | TssF | PPUTGB1_RS14075 (tssF) | 3103089..3104909 | + | 1821 | WP_012272400.1 | type VI secretion system baseplate subunit TssF |
| T6CP002488 | TssG | PPUTGB1_RS14080 (tssG) | 3104873..3105943 | + | 1071 | WP_012272401.1 | type VI secretion system baseplate subunit TssG |
| T6CP002489 | TssH | PPUTGB1_RS14085 (tssH) | 3105940..3108537 | + | 2598 | WP_012272402.1 | type VI secretion system ATPase TssH |
| T6CP002490 | TssJ | PPUTGB1_RS14090 (tssJ) | 3108562..3109284 | + | 723 | WP_012272403.1 | type VI secretion system lipoprotein TssJ |
| T6CP002491 | TssK | PPUTGB1_RS14095 (tssK) | 3109281..3110624 | + | 1344 | WP_012272404.1 | type VI secretion system baseplate subunit TssK |
| T6CP002492 | TssL | PPUTGB1_RS14100 | 3110621..3111337 | + | 717 | WP_012272405.1 | type IVB secretion system protein IcmH/DotU |
| T6CP002493 | TssM | PPUTGB1_RS14105 | 3111368..3115165 | + | 3798 | WP_012272406.1 | type VI secretion protein IcmF |
| PPUTGB1_RS14110 (tagF) | 3115162..3116070 | + | 909 | WP_012272407.1 | type VI secretion system-associated protein TagF | ||
| T6CP002494 | TssM | PPUTGB1_RS14115 (tssM) | 3116067..3118562 | + | 2496 | WP_012272408.1 | type VI secretion system membrane subunit TssM |
| T6CP002495 | TssD | PPUTGB1_RS14120 | 3118706..3119224 | + | 519 | WP_012272409.1 | type VI secretion system tube protein Hcp |
| T6CP002496 | TssA | PPUTGB1_RS14125 (tssA) | 3119309..3120406 | + | 1098 | WP_012272410.1 | type VI secretion system protein TssA |
| PPUTGB1_RS14130 | 3120521..3123037 | + | 2517 | WP_012272411.1 | excinuclease ABC subunit UvrA | ||
| PPUTGB1_RS14135 | 3123125..3123631 | + | 507 | WP_012272412.1 | sigma-70 family RNA polymerase sigma factor | ||
| PPUTGB1_RS14140 | 3123631..3124593 | + | 963 | WP_012272413.1 | FecR domain-containing protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| IMU00331 |
PPUTGB1_RS14045 (Tri1) | EFF01495 |
Pseudomonas putida GB-1 | chromosome (NC_010322) | 3096203..3097318 (-) | 501229376 |
Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|