Detailed information of component protein


Summary

Component ID T6CP002483
Component protein type TssI
T6SS ID (Type) T6SS00252 insolico (Type i4b)
Strain Pseudomonas putida GB-1
Replicon chromosome
Sequence Protein sequence (614 a.a.); Nucleotide sequence (1842 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PPUTGB1_RS14040
Coordinate (Strand) 3094169..3096010 (-)
NCBI ID WP_012272393.1
RefSeq NC_010322
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 2.1e-93 39..346
Phage_base_V PF04717.14 3.5e-15 398..465
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 614 a.a.    

>T6CP002483 NC_010322:c3096010-3094169 [Pseudomonas putida GB-1] [TssI]
MIMELASALLSPQNRRLFKFHNLANPEQELLLETFKGVEGLSRAFNYELLLICEDSGVPLKSMMGQHVSIEIELAEGAPR
HITGYLTRFASIGSDGGMARYTATLNPWFSMLKNRFDTRIFQGNTVEEVVTEVFALCPAFSRHEFRLTRPQKRYTYITQY
RETDFNFVQRLLEEEGMFYYFEHTAEGHTMIICDDSSTLVDIPEQPQIRFHSASVTETADSITQWSGNRQLQSGKMATQT
FDYRQPNNRLPVALNSVNKQGDVENFEIYDFPGQYTHGTYDEGETLLRLRIEALELRGKKFEGASNCRAMKPGYTFELLQ
HYSHDQGAVEDRQFLLMSVESEGHNNYLSGQQASYFNTFSCVRKKIPFRPQLSTPRPTIAGPQTAIIVGPPGEEIFTDEL
GRVKIQFHWDRKGQHNDHSSCWVRVAQSGASGGFGSIQIPRVGDEVVVVFLDGNPDRPLIMGSLYNSSNTPPWALPANKT
QSGFLTRSTKGKGSNANFFRFEDKAGAEQIIMHAERNLDTEVEADESLKVGGNRTINVEGKHSETIKLETSIAVEEGSYF
VTVDQGAVKIKAATSITLEVGNSKLEMKSDGTITLSGITVDVAGSTIINLNKS*

  Nucleotide sequence: 1842 bp    

>T6CP002483 NC_010322:c3096010-3094169 [Pseudomonas putida GB-1] [TssI]
ATGATCATGGAACTGGCCTCCGCGCTGCTATCGCCGCAGAACCGCCGGCTGTTCAAGTTTCACAACCTGGCCAACCCTGA
GCAGGAACTGTTGCTGGAAACCTTCAAGGGCGTCGAGGGCCTTTCGCGGGCGTTCAACTACGAACTGCTGCTGATCTGCG
AAGACTCTGGCGTGCCGCTTAAATCCATGATGGGCCAGCACGTGAGCATCGAGATCGAGTTGGCCGAAGGTGCTCCACGC
CACATCACCGGTTACCTTACGCGCTTTGCCAGCATTGGCAGCGATGGCGGCATGGCCCGTTACACCGCCACCCTCAACCC
CTGGTTTTCGATGCTGAAGAACCGCTTCGACACGCGGATCTTCCAAGGCAACACGGTCGAGGAAGTGGTCACCGAGGTAT
TCGCCCTGTGTCCGGCTTTCTCCCGCCACGAGTTCCGCCTGACCCGCCCGCAGAAGCGCTACACCTACATCACCCAGTAC
CGCGAAACCGACTTCAATTTCGTCCAGCGCCTGCTGGAGGAAGAGGGGATGTTCTATTACTTCGAGCACACCGCAGAAGG
CCACACCATGATCATCTGCGATGACTCCAGCACACTGGTGGACATCCCCGAGCAGCCGCAAATCCGTTTCCACAGCGCCT
CGGTTACCGAGACCGCCGACTCCATCACCCAGTGGAGCGGCAACCGCCAGCTGCAGTCCGGCAAGATGGCCACGCAGACC
TTCGATTACCGCCAGCCCAACAACCGCCTGCCGGTGGCGCTGAACAGCGTGAACAAGCAGGGCGATGTCGAGAACTTCGA
GATCTACGACTTCCCCGGTCAGTACACCCACGGCACCTACGATGAAGGCGAAACCCTGCTGCGCCTACGTATCGAAGCGC
TGGAGCTGCGCGGCAAAAAGTTCGAAGGCGCCAGTAATTGCCGCGCCATGAAGCCCGGCTATACCTTCGAACTGCTGCAG
CACTACAGCCACGATCAAGGCGCCGTAGAGGACCGACAGTTCCTGCTGATGAGCGTGGAAAGCGAAGGCCACAACAACTA
CCTCAGCGGCCAACAGGCGAGCTATTTCAACACGTTCAGTTGCGTGCGCAAGAAGATCCCGTTCCGCCCGCAACTGAGCA
CTCCCCGGCCGACCATCGCCGGCCCGCAGACTGCCATCATCGTTGGCCCACCCGGCGAAGAGATATTCACCGACGAACTG
GGGCGGGTGAAAATCCAGTTTCACTGGGACCGTAAAGGCCAGCACAACGACCACAGTTCGTGCTGGGTACGCGTCGCCCA
ATCCGGCGCCAGTGGCGGCTTCGGCAGCATCCAGATCCCGCGTGTGGGCGATGAAGTGGTGGTAGTGTTCCTCGACGGCA
ACCCGGACCGCCCGTTGATCATGGGCAGCCTGTACAACAGCAGCAACACCCCGCCGTGGGCACTGCCGGCGAACAAGACC
CAGAGTGGGTTCCTGACGCGCTCTACCAAAGGCAAAGGGTCGAATGCCAACTTCTTCCGCTTCGAAGACAAGGCCGGCGC
CGAGCAAATCATCATGCATGCTGAGCGCAACCTGGATACCGAGGTTGAGGCAGATGAGAGTCTCAAGGTGGGTGGCAATC
GAACGATCAATGTCGAAGGTAAGCATTCCGAGACGATCAAGCTGGAAACCAGCATTGCGGTGGAAGAGGGGTCGTACTTT
GTGACCGTGGATCAAGGGGCGGTGAAAATTAAGGCGGCAACGTCTATTACGCTTGAGGTCGGAAACAGCAAGCTGGAGAT
GAAGTCGGATGGCACGATTACCCTGTCAGGTATCACTGTGGACGTTGCAGGCAGCACGATAATTAATCTGAACAAGTCTT
GA