Detailed information of component protein


Summary

Component ID T6CP002489
Component protein type TssH
T6SS ID (Type) T6SS00252 insolico (Type i4b)
Strain Pseudomonas putida GB-1
Replicon chromosome
Sequence Protein sequence (866 a.a.); Nucleotide sequence (2598 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PPUTGB1_RS14085
Coordinate (Strand) 3105940..3108537 (+)
NCBI ID WP_012272402.1
RefSeq NC_010322
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 3.4e-42 596..763
AAA_lid_9 PF17871.3 2.2e-28 365..456
ClpB_D2-small PF10431.11 1.2e-12 772..843
AAA PF00004.31 1.2e-08 225..337
Clp_N PF02861.22 3.7e-05 21..73
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 866 a.a.    

>T6CP002489 NC_010322:3105940-3108537 [Pseudomonas putida GB-1] [TssH]
VNLKSLFAKLNETSRTATESAAALCLSEHHYDVEVEHLLLQLLDSSDNDLAPILRHYEVVTERLQAQLVTALGTFKKGNT
RTPALSPHITRMIEQAWLLASIEYGVGQVRSGHLLQALLDDAELRRVVMASAPELEKINANDLRLNLAALVEGSAESRQA
SPLASPAAPIASSTKAGGKTPALDQYTVNLTQSAREGRIDPVLGREFEVRQMVDILTRRRQNNPILTGEAGVGKTAVVEG
LALRIAQGDVPAVLKDVALHTLDLGLLQAGAGVKGEFENRLKAVIEEVKRSLHPIILFIDEAHTLIGSGGQAGQNDAANL
LKPALARGELRTIAATTWAEYKKYFEKDAALARRFQVVKVEEPDEDKAIHMLRGLLGKMREHHKVAVMDEALVQAVRLSN
RYITGRQLPDKAVSVLDTACARIALAQSSQPGLLEDCRRQIDNLQAEIAVLGHEAGKGHDHARRLGELQAALQTEQQREQ
QLIAQWQQELELVEQLKALDAANDTDAEQLNTLRAELARVQGDQPLVHALVDSGAIAQVISGWTGIPLGKMLRDEIDTVQ
RLPALLGERVLGQDHALQEIGKRIKISRARMEDPNKPIGVFLLLGPSGVGKTETALALADTLYGGERNLITINMSEYQEA
HTVSSLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFFQVFDKGVLDDGEGREINFRNTVIILTSNT
GTERIMQTCLNATELPTPEAIVEGLRNELNQVFKPAFLGRLNIVPFYPVQDQILERIVALKLERIAKRFARNHQAELGYD
EALVKAIAARCTEVDSGARNIDNILSQTLMPELAQRVLERMAQDTPIERLVIELGSDGDFAYRLA*

  Nucleotide sequence: 2598 bp    

>T6CP002489 NC_010322:3105940-3108537 [Pseudomonas putida GB-1] [TssH]
GTGAACCTGAAGTCTCTGTTCGCCAAGCTAAACGAAACCAGCCGCACGGCCACCGAAAGCGCGGCGGCCCTGTGCCTGTC
GGAGCATCACTACGATGTCGAGGTTGAGCACCTGCTGCTGCAACTGCTCGACAGCAGTGACAATGACCTGGCACCGATCC
TGCGCCACTATGAGGTCGTCACCGAGCGCCTGCAGGCGCAACTGGTCACCGCCCTGGGCACCTTCAAGAAAGGCAATACC
CGTACCCCAGCGCTGTCGCCGCACATCACCCGCATGATCGAGCAGGCCTGGTTGCTGGCATCGATCGAGTATGGCGTTGG
CCAAGTACGCAGCGGCCACTTGCTGCAAGCCCTGCTTGATGATGCCGAACTGCGCCGAGTGGTGATGGCTTCGGCACCGG
AGCTGGAAAAGATCAATGCCAATGACCTGCGCCTGAACCTTGCCGCACTGGTCGAAGGTAGCGCCGAGTCGCGGCAGGCC
AGCCCCCTGGCCAGCCCCGCAGCACCGATTGCCAGCAGCACTAAAGCTGGGGGCAAGACCCCAGCGCTGGACCAGTACAC
CGTCAACCTTACCCAAAGTGCCCGCGAAGGCCGCATTGACCCAGTCCTGGGCCGCGAGTTCGAAGTGCGGCAAATGGTCG
ACATCCTCACCCGTCGCCGGCAAAACAACCCGATTCTCACCGGTGAAGCCGGGGTCGGCAAAACCGCCGTGGTCGAGGGC
CTGGCCCTGAGAATCGCCCAGGGCGATGTACCAGCGGTGCTCAAGGATGTGGCCCTGCACACCCTTGACCTGGGCCTGCT
GCAGGCGGGCGCCGGGGTAAAGGGCGAGTTCGAAAACCGCCTGAAAGCGGTCATCGAAGAGGTCAAGCGCAGCCTGCACC
CAATCATCCTGTTCATCGACGAAGCCCACACCCTGATCGGTTCTGGCGGCCAGGCCGGGCAGAACGATGCCGCCAACCTG
CTCAAGCCGGCCCTTGCCCGTGGCGAACTGCGCACCATCGCCGCCACCACCTGGGCCGAATACAAGAAGTACTTCGAGAA
AGACGCCGCCCTCGCCCGCCGCTTTCAGGTAGTAAAGGTCGAAGAACCTGATGAAGACAAAGCCATTCACATGCTGCGCG
GGCTACTGGGCAAGATGCGCGAGCACCACAAGGTGGCGGTGATGGACGAAGCGCTGGTACAAGCGGTGCGCCTGTCCAAC
CGCTACATCACCGGCCGCCAGCTGCCCGACAAAGCCGTTAGCGTGCTCGACACCGCCTGCGCCCGCATCGCCCTGGCGCA
GTCGTCGCAGCCAGGCTTGCTGGAAGACTGCCGTCGGCAGATCGACAACCTGCAGGCAGAAATCGCCGTTCTTGGCCACG
AAGCGGGCAAAGGCCATGACCATGCCCGTCGCCTAGGCGAGCTGCAGGCCGCGTTGCAGACCGAACAGCAGCGCGAGCAG
CAGCTCATCGCGCAGTGGCAACAGGAGCTGGAACTGGTCGAGCAACTCAAGGCACTGGATGCCGCCAACGACACCGACGC
CGAGCAGCTCAATACCCTGCGCGCCGAACTGGCCCGTGTGCAAGGTGACCAGCCACTGGTCCACGCCCTGGTCGACAGCG
GCGCCATTGCCCAGGTCATCAGCGGCTGGACCGGCATCCCGCTGGGCAAGATGCTGCGCGACGAAATCGATACCGTACAG
CGCCTGCCGGCCCTGCTGGGCGAGCGCGTACTGGGCCAGGACCATGCCCTGCAGGAAATCGGCAAACGCATCAAGATTTC
CCGTGCGCGCATGGAAGACCCCAACAAACCCATCGGCGTGTTCCTGCTGCTCGGCCCCAGCGGCGTCGGCAAGACCGAAA
CTGCCCTGGCCCTGGCCGATACGCTGTACGGCGGCGAGCGCAACCTGATCACCATCAACATGTCCGAGTACCAGGAGGCC
CACACCGTGTCGAGCCTCAAAGGCTCGCCCCCCGGCTACGTCGGTTACGGCGAAGGCGGCGTGCTGACCGAGGCGGTACG
CCGCAAACCCTACAGCGTGGTGCTGCTGGACGAGGTGGAAAAAGCCCACCCCGACGTACTCGAACTGTTTTTCCAGGTCT
TCGACAAGGGCGTGCTGGACGACGGTGAAGGCCGCGAGATCAACTTCCGCAACACAGTGATCATCCTCACCTCCAACACC
GGCACCGAACGCATCATGCAAACCTGCCTGAATGCCACCGAGCTGCCAACGCCAGAGGCCATCGTCGAAGGCCTGCGCAA
CGAGCTCAACCAAGTGTTCAAGCCGGCGTTTCTCGGCCGCCTGAACATCGTGCCGTTCTACCCGGTGCAGGACCAGATCC
TCGAGCGCATCGTCGCCCTCAAGCTCGAGCGTATCGCCAAGCGCTTCGCCCGCAACCACCAGGCCGAGTTGGGCTACGAC
GAGGCGCTGGTCAAAGCCATCGCCGCCCGTTGCACCGAGGTCGACAGCGGCGCACGCAACATCGACAACATCCTGTCGCA
AACCCTGATGCCCGAGCTCGCCCAGCGTGTGCTCGAACGCATGGCCCAGGACACACCGATCGAGCGCCTTGTGATCGAAC
TGGGCAGCGATGGCGATTTCGCCTATCGCCTGGCCTGA