Detailed information of component protein


Summary

Component ID T6CP002487
Component protein type TssF
T6SS ID (Type) T6SS00252 insolico (Type i4b)
Strain Pseudomonas putida GB-1
Replicon chromosome
Sequence Protein sequence (607 a.a.); Nucleotide sequence (1821 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PPUTGB1_RS14075
Coordinate (Strand) 3103089..3104909 (+)
NCBI ID WP_012272400.1
RefSeq NC_010322
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 6.8e-215 1..603
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 607 a.a.    

>T6CP002487 NC_010322:3103089-3104909 [Pseudomonas putida GB-1] [TssF]
MLDELLPYYEKELSHLRFLGQEFAAQYPKIASRLLIEGDNCEDPHTERLIEAFSFLSARVHKKLDDEFPEIVESFLEVLY
PHYLRPTPSMSIAELSLGRHEKVTEAYHVARHTEMHANAVEGVVCKFRTCYPVELWPIAVQQASFAEMERSAFNGHSADL
VARLRIRLTATGDALFGQMEMDRLRFFLDGEATLMLHLYELLFNNLAKATLSFHDEGRSREVALPAGALKAVGFTRDEGL
VDYSERSFLGYRLLHEYFTFPDKFMFFDLSGFARILQGKAIEQVEINFYFSDYDLSERLARLTQNIGRNNFKLNCTPIIN
LFRQQAEPIKLTHTQHEYPVTPDTRLHNAAEVVSIDRVRRVRKLGGIDQVTTCLPFFEPRGEQDPHSSFWVARRRNQGDA
TAMSIRVVDRDLELIGASSDTLSIGLTCSNRDVPLMLPFGGERGDFNIPANSVIKDIRCLRKPTATVRVPLGKGLIWRLI
AHLSLNHMSLVSQGREVLLELLSLYNYRNVSAIRKQINGIKAISSEPVVARIGHPRPNFVRGVGITLTLDEHQYTGSGVF
LFGMVLDHFFGQYCSMNSFTQLTLRTQQREKRIVQWPARTGDQPLV*

  Nucleotide sequence: 1821 bp    

>T6CP002487 NC_010322:3103089-3104909 [Pseudomonas putida GB-1] [TssF]
ATGCTCGACGAACTGCTGCCCTACTACGAAAAGGAACTGTCGCACCTGCGCTTCCTCGGCCAGGAGTTTGCTGCGCAGTA
CCCGAAAATCGCTTCTCGTTTGCTGATCGAGGGCGACAACTGCGAGGACCCGCATACCGAGCGCCTGATCGAGGCGTTCT
CGTTCCTTTCTGCGCGGGTGCACAAGAAGCTCGATGACGAGTTCCCGGAAATCGTCGAATCCTTCCTCGAGGTGCTGTAC
CCGCATTACCTGCGCCCGACCCCGTCCATGTCGATTGCCGAGTTGAGCCTGGGCAGGCATGAGAAAGTCACCGAGGCATA
CCACGTGGCGCGCCATACCGAAATGCATGCCAATGCCGTCGAGGGCGTGGTGTGCAAGTTCCGCACCTGTTACCCCGTAG
AGCTGTGGCCGATTGCCGTGCAACAGGCCTCGTTCGCCGAAATGGAACGCTCGGCATTCAATGGCCACAGCGCCGACCTG
GTCGCACGCCTGCGTATCCGCCTGACCGCCACAGGTGATGCCCTGTTCGGGCAGATGGAAATGGACCGCCTGCGGTTTTT
CCTCGACGGCGAAGCCACGCTGATGCTGCATCTATATGAGTTGCTGTTCAACAACCTGGCCAAGGCCACCCTGAGCTTCC
ACGACGAGGGCCGCAGCCGTGAAGTCGCGCTGCCAGCCGGTGCGCTAAAGGCCGTGGGTTTTACCCGTGACGAAGGCCTG
GTGGATTACTCCGAGCGCTCGTTCCTGGGCTACCGGCTGCTGCACGAGTATTTCACCTTCCCCGACAAATTCATGTTCTT
CGACCTCAGTGGTTTTGCACGCATCCTGCAAGGCAAGGCTATCGAGCAGGTCGAGATCAATTTCTATTTTTCCGACTACG
ACCTCAGCGAGCGCCTGGCGCGGCTGACGCAGAACATCGGGCGCAACAATTTCAAGCTCAACTGCACGCCAATCATCAAT
CTGTTCCGCCAGCAGGCCGAGCCGATCAAGCTGACCCACACCCAGCACGAGTACCCGGTCACGCCTGATACCCGGCTGCA
CAACGCTGCCGAAGTGGTGTCGATCGACCGCGTGCGCCGGGTGCGCAAACTTGGCGGCATCGACCAGGTCACCACCTGCC
TGCCGTTTTTCGAGCCCCGTGGCGAACAGGACCCGCACAGCAGCTTCTGGGTCGCCCGTCGGCGCAATCAGGGTGACGCC
ACGGCCATGAGCATCCGCGTGGTCGACCGTGACCTGGAGCTGATCGGCGCCAGCAGCGACACCCTCAGCATCGGCCTCAC
CTGCAGCAACCGCGATGTGCCGCTGATGCTGCCGTTCGGTGGCGAGCGTGGCGATTTCAACATTCCCGCCAACTCGGTAA
TCAAGGACATCCGCTGCCTGCGCAAGCCCACTGCCACCGTGCGCGTGCCCTTGGGAAAAGGCTTGATCTGGCGGCTGATC
GCGCACCTGTCGCTGAACCATATGTCGCTGGTCAGCCAAGGCCGCGAAGTGCTGCTGGAACTGCTGTCGCTCTACAACTA
CCGCAACGTGTCGGCCATCCGCAAACAGATCAATGGCATCAAGGCCATCAGCAGCGAGCCAGTGGTTGCGCGCATCGGCC
ATCCGCGGCCGAATTTTGTGCGGGGCGTAGGCATTACCCTCACCCTCGACGAGCACCAATACACCGGCAGCGGCGTGTTC
CTGTTCGGCATGGTGCTGGACCACTTCTTCGGCCAGTACTGCTCGATGAACAGCTTCACCCAACTGACCCTGCGTACCCA
ACAACGAGAAAAGAGAATCGTCCAATGGCCAGCACGCACTGGCGATCAGCCCCTGGTCTGA