Detailed information of component protein


Summary

Component ID T6CP002493
Component protein type TssM
T6SS ID (Type) T6SS00252 insolico (Type i4b)
Strain Pseudomonas putida GB-1
Replicon chromosome
Sequence Protein sequence (1266 a.a.); Nucleotide sequence (3798 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PPUTGB1_RS14105
Coordinate (Strand) 3111368..3115165 (+)
NCBI ID WP_012272406.1
RefSeq NC_010322
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 1.1e-56 181..432
IcmF-related PF06761.14 1.4e-48 491..876
IcmF_C PF06744.14 3e-20 1140..1239
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 1266 a.a.    

>T6CP002493 NC_010322:3111368-3115165 [Pseudomonas putida GB-1] [TssM]
MKTLLRLLKSFWVLLPLLWLASLLIGWLVAPLVPWLRHHVPEALAIISACFLLVIVLRQYQRIRAEHNLENLLQIEVDRS
WNATGEFRDQQVLRERLKHAIAMLRTDRSAGGGGKAALSDLPWYLVVGMSAAGKTSLLTHSGLSASIATANDSESGTQHC
DWYFSPDAVMIDTAGRYLRDDQSASEFSAFLRMLRKQRGKAAINGLVLVVSLPELLAANSDERNALAAQLVARVEEYAEC
LDANPPVYLMLSKTDQLPGFSQAFDGLDLHERQQPLGMTFGLSEIRNSGLHAVLQTRLKNLQGHVRQHVDAQMIALGAEA
DSALLNFPQYFAALSDVLEQFLDHFTRGHRGGTPLLLRGLYFTSALQTGQQLGQVYEDVIADEFALQAAYDEPAERAGKP
VGNRSYFITDTFRQVIFPDRDLTLYQSRLGRQATFSPLLLGLAVATGVLFIGWQALSFINNRQWLDGLRGQLAQIEHAQD
REQLLAAGKGLEVLRGQMAVVEAHRLQGVPLLLAAGLYHGEAVHQVSSAAYLAQLRSQALEPITRSLQVQMRAFNTFANG
INQELEFTPAPLPKKRNGKPLAPALAAKATAANTRLGGYAAKVNLATASDAAELSATTGGLSLSEEMLGRLDEQQVASII
DAYNTLKMYLLLTEPQIHPDPAFVAASLPQAWTGAAAEGAPADAGVIEENAPLYVQLLEQGQAPALPRNEQLIDETRQNL
KAFMISSSLVDREYLRLQLESSRQFPTLSLNDLVPQPGRALLYGSAGVPAIYTRQGWDTFVKPELIKLVSGNLRNESDWV
LDGEGGDALVQKANFVREFMTRYKRDYTQAWYKMVSSVGVRHFTDLASATEQLGLLSDVQNSPVKNLLAAVNDNTQWDLP
TKHAIPAPGAARDDGFWSKVTGLFDTENALPTSVAPALPAVDDGSLAKRFEPVARVFAQNNAEGADSTIMDRYLAALRKL
KVRMNNIQRSQDVGKSSKQLISETLEGQPSEVTTVRNYVESSVDTSQDGLSRSLQGLFSLPIQYAWAALRDPAGQQIAKA
WAQQIAKPWEQVMAHRYPIAGGSNNEASVKDLQRFVDPDSGLLPAFKRNEIGNLAGGEGLGVGDSKGPALVNPGMLNSID
KASSVGQVIASLSDRDNGFEIMLEPSANFTDIVFTLDGQEQHYRNGRSSWNRFAWPGTSNAPGARLDVVTLSGARVTVFD
FPGRWGLLRMNESARVDDLDGIQQRFSWNTASGRVSLVVRNFGGVKLTDLGDVKALSALNDRGGQ*

  Nucleotide sequence: 3798 bp    

>T6CP002493 NC_010322:3111368-3115165 [Pseudomonas putida GB-1] [TssM]
ATGAAAACATTACTGCGTCTGTTGAAGAGTTTCTGGGTGCTGCTGCCATTGCTGTGGCTGGCGAGCCTGTTGATTGGCTG
GCTGGTCGCGCCGCTGGTGCCGTGGCTGCGTCATCACGTACCTGAAGCGCTGGCCATCATCAGTGCCTGCTTCCTGCTGG
TGATCGTGCTGCGCCAGTACCAGCGCATCCGCGCCGAGCACAACCTGGAGAACCTGCTGCAAATCGAAGTCGACCGCTCG
TGGAACGCCACGGGTGAGTTCCGAGACCAACAGGTATTGCGCGAGCGCCTGAAGCACGCCATCGCCATGCTGCGCACCGA
TCGCTCAGCCGGTGGCGGCGGCAAGGCGGCGCTGTCCGACCTGCCCTGGTACCTGGTGGTGGGCATGTCCGCTGCCGGCA
AGACCTCGCTGCTGACCCATTCCGGTCTGTCGGCCAGCATCGCCACGGCCAACGACAGTGAAAGCGGTACCCAGCATTGT
GACTGGTACTTCAGCCCCGACGCCGTAATGATCGACACCGCCGGGCGCTACTTGCGCGACGACCAGTCAGCCAGTGAGTT
CTCGGCCTTCCTGCGCATGTTGCGCAAGCAACGCGGCAAGGCGGCGATCAATGGCTTGGTGCTGGTGGTCAGCCTGCCCG
AGCTGCTGGCGGCCAACAGCGATGAGCGCAATGCCCTGGCGGCGCAGCTGGTGGCACGGGTAGAAGAATACGCCGAATGC
CTCGACGCCAACCCGCCGGTCTACCTGATGCTGAGCAAGACCGACCAGTTACCGGGCTTCAGCCAGGCATTCGACGGCCT
CGACCTGCATGAGCGCCAGCAACCGCTGGGCATGACCTTTGGCCTGTCGGAAATCCGCAACAGTGGCCTGCACGCCGTGC
TGCAGACGCGCCTGAAGAACTTGCAGGGTCACGTTCGCCAGCACGTCGATGCGCAGATGATCGCCCTCGGCGCCGAGGCC
GACAGTGCGCTGTTGAACTTCCCGCAGTACTTCGCCGCCCTCAGCGATGTACTCGAGCAATTCCTCGACCACTTCACGCG
TGGCCATCGCGGCGGGACCCCGCTGCTGCTGCGTGGCCTGTACTTCACCAGTGCGCTGCAGACCGGGCAGCAGCTGGGAC
AAGTCTATGAAGACGTCATCGCCGACGAGTTCGCCTTGCAAGCGGCCTACGATGAGCCTGCCGAACGTGCTGGCAAGCCC
GTGGGCAACCGCAGCTACTTCATCACCGACACCTTCCGCCAGGTGATATTCCCGGACCGCGACCTGACCTTGTACCAGTC
ACGCCTGGGCCGGCAGGCCACGTTCAGCCCGCTGTTACTGGGCCTGGCCGTTGCCACGGGTGTCCTGTTCATCGGCTGGC
AGGCATTGTCGTTCATCAACAACCGGCAGTGGCTCGATGGCTTGCGCGGGCAACTGGCGCAGATCGAACATGCGCAGGAT
CGCGAGCAACTGCTGGCCGCAGGCAAGGGCCTGGAAGTGCTGCGCGGACAGATGGCGGTAGTCGAAGCCCATCGCCTGCA
AGGCGTCCCCCTGCTGTTGGCTGCTGGCCTTTACCACGGTGAAGCAGTCCATCAGGTGAGCAGTGCCGCATACCTGGCGC
AATTGCGCAGCCAGGCGCTTGAGCCGATCACCCGCAGCCTGCAAGTGCAGATGCGCGCGTTCAACACATTCGCCAACGGC
ATCAACCAGGAACTGGAGTTCACCCCAGCGCCGCTGCCTAAAAAACGCAACGGCAAGCCTCTCGCCCCTGCCTTGGCCGC
CAAGGCCACAGCAGCCAACACCCGCCTGGGTGGCTACGCCGCCAAGGTCAACCTGGCCACCGCCAGCGATGCCGCCGAGC
TGTCCGCCACCACCGGTGGCCTGTCGTTGTCCGAAGAAATGCTCGGCCGACTTGACGAACAGCAGGTGGCCTCGATCATC
GACGCCTACAACACGCTCAAGATGTACCTGCTGCTGACCGAGCCCCAGATACATCCAGATCCGGCCTTCGTCGCTGCCAG
CCTGCCCCAGGCCTGGACAGGTGCAGCCGCTGAAGGGGCCCCGGCCGACGCCGGGGTAATCGAAGAAAACGCACCGCTTT
ACGTGCAGTTGCTGGAGCAAGGCCAGGCGCCGGCACTGCCGCGCAACGAGCAACTTATCGACGAGACCCGGCAGAACCTC
AAGGCATTCATGATCTCCAGCTCGCTGGTCGATCGTGAATACCTGCGCCTGCAACTTGAGTCGAGCCGCCAGTTCCCGAC
GTTGAGCCTCAACGACCTGGTGCCGCAACCGGGCCGTGCGCTGCTGTACGGGTCCGCTGGCGTGCCAGCAATCTACACGC
GCCAGGGCTGGGACACCTTCGTCAAGCCCGAACTGATCAAGCTGGTGTCGGGCAACCTGCGCAACGAGTCGGACTGGGTG
CTGGACGGTGAAGGCGGCGACGCGCTCGTGCAAAAAGCCAACTTCGTGCGCGAGTTCATGACCCGCTACAAGCGCGACTA
CACCCAGGCCTGGTACAAGATGGTCAGCAGCGTCGGTGTGCGCCACTTCACCGACCTGGCCTCGGCCACCGAGCAACTGG
GCCTGCTCAGTGACGTGCAGAACTCGCCTGTGAAAAACCTGCTGGCGGCGGTCAATGACAACACCCAGTGGGACCTGCCG
ACCAAGCACGCGATCCCGGCCCCTGGCGCCGCCCGCGATGACGGTTTCTGGAGCAAGGTCACAGGCTTGTTCGACACCGA
GAACGCCCTGCCCACCAGCGTCGCCCCGGCCCTGCCGGCGGTGGACGATGGCAGCCTGGCCAAACGTTTCGAGCCGGTGG
CGCGAGTGTTTGCGCAAAACAACGCCGAAGGCGCCGACAGCACCATCATGGACCGCTACCTGGCCGCCTTGCGCAAGCTC
AAGGTACGCATGAACAACATCCAGCGTTCGCAGGATGTGGGCAAAAGCAGCAAGCAGCTGATCAGCGAAACCTTGGAAGG
CCAGCCAAGCGAAGTCACCACCGTACGCAACTATGTGGAGAGCAGCGTCGACACCAGCCAGGACGGCTTGTCCCGCTCAC
TGCAGGGGCTGTTCAGCCTGCCCATCCAATACGCCTGGGCGGCCCTGCGTGACCCGGCCGGCCAGCAGATCGCCAAGGCC
TGGGCGCAACAGATTGCCAAACCGTGGGAACAGGTCATGGCGCACCGTTACCCGATTGCCGGCGGCAGCAACAATGAAGC
GTCGGTGAAAGACCTGCAACGCTTCGTCGACCCGGACAGCGGCCTGCTGCCCGCCTTCAAACGTAACGAAATCGGCAACC
TGGCCGGCGGTGAGGGCCTGGGTGTGGGCGACAGCAAGGGGCCAGCGCTGGTCAACCCTGGCATGCTCAACAGCATCGAC
AAGGCCAGCTCGGTGGGCCAGGTGATTGCCAGCCTGTCTGACCGTGACAACGGCTTCGAGATCATGCTGGAGCCGTCGGC
CAACTTCACCGACATCGTGTTCACCCTCGACGGCCAGGAGCAGCACTACCGCAACGGCCGTAGCAGCTGGAACCGCTTCG
CCTGGCCGGGCACCAGCAACGCACCTGGCGCACGCCTGGACGTAGTGACCCTGAGCGGTGCGCGGGTGACCGTGTTCGAC
TTCCCGGGGCGCTGGGGCTTGCTGCGTATGAACGAAAGCGCCCGCGTAGACGACCTGGATGGCATTCAGCAACGCTTCAG
CTGGAACACCGCCAGTGGTCGCGTGAGCCTTGTGGTGCGCAACTTTGGCGGGGTCAAGCTGACCGACCTAGGTGACGTCA
AGGCGCTGAGCGCCCTGAACGACAGGGGCGGCCAATGA