SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP011642
Component protein type	PAAR
T6SS ID (Type)	T6SS00252 (Type i4b)
Strain	Pseudomonas putida GB-1
Replicon	chromosome
Sequence	Protein sequence (407 a.a.); Nucleotide sequence (1221 bp)
Reference	[1] Barret M, Egan F, Fargier E, et al. Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncovered. Microbiology (Reading). 2011 Jun;157(Pt 6):1726-1739. doi: 10.1099/mic.0.048645-0. Epub 2011 Apr 7. PMID: 21474537

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	PPUTGB1_RS27950
Coordinate (Strand)	3092337..3093557 (-)
NCBI ID	WP_012272391.1
RefSeq	NC_010322
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

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Domain	Pfam ID	E-value	Aligned region
PAAR_motif	PF05488.15	3.8e-17	77..141
GH-E	PF14410.8	8.4e-07	340..388

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Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction	Region	Sequence
No matching records found

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

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Prediction	Probability	Cleavage site	Signal peptide sequence
		-	-

Protein sequence: 407 a.a.

						>T6CP011642 NC_010322:c3093557-3092337 [Pseudomonas putida GB-1] [PAAR]
MTAAAARLDDPIEHSSALGGLLAGLAIGAGAVLIGIAVVGTGGLGAVALAAMVGAGAATGAGIGQLIGSLSFACSETGQI
RSGSGNVYINGKPAARAHLDNAECSDHPGIPKILAQGSDSVYINGQPAARVGDRTVCDAKISAGSPNVYIGGGTETTDAI
DPEVPVWLERAVMGVGLASAFVLASPVLVVAGLVGGIAGGMAGHWAGGELFGEGSDGQKLMAFGGALLGGGIGAKGGKAF
DARYEIKVQGFGSNLGNVKIVPRSKPDVEAPPMSRPVRGPDGRFIKSTDGARLNRKTEYPSGYRAGVKEEVLDANTIQSG
KHAGKVMTADGDKVYRNDPRLTIEHNKPVVEHWNEVGYNSTRAERNDFYNDTGNMSLKLRSANSSEGAKMGASGVRYRQD
VGPNYE*					

Nucleotide sequence: 1221 bp

						>T6CP011642 NC_010322:c3093557-3092337 [Pseudomonas putida GB-1] [PAAR]
ATGACTGCGGCTGCCGCGAGATTAGACGATCCAATCGAGCACTCTAGCGCCTTAGGCGGATTACTTGCTGGTTTGGCGAT
TGGTGCAGGTGCAGTGCTCATCGGTATTGCTGTGGTTGGCACCGGCGGGCTTGGGGCGGTAGCCCTCGCTGCGATGGTGG
GCGCGGGAGCCGCTACTGGTGCTGGAATTGGTCAACTGATTGGTAGCTTATCGTTCGCCTGTAGTGAAACGGGACAAATA
CGATCAGGGTCGGGCAACGTTTATATAAATGGGAAACCTGCTGCGAGGGCGCATCTGGATAATGCCGAGTGCTCTGATCA
TCCCGGGATCCCTAAGATATTAGCTCAGGGCAGCGATTCGGTATATATAAATGGTCAGCCTGCGGCTCGAGTAGGTGACA
GAACAGTTTGCGACGCGAAAATAAGTGCGGGCTCTCCCAATGTATATATAGGTGGGGGCACCGAGACGACGGATGCCATT
GACCCGGAGGTCCCTGTCTGGTTGGAGCGTGCAGTCATGGGGGTGGGACTGGCAAGTGCATTTGTGCTGGCAAGTCCTGT
TTTGGTGGTCGCAGGGTTGGTGGGTGGTATAGCGGGTGGCATGGCAGGGCATTGGGCCGGCGGCGAGCTGTTTGGAGAGG
GCTCCGACGGCCAGAAGTTGATGGCGTTTGGTGGTGCTCTGCTTGGAGGGGGGATCGGCGCCAAGGGCGGGAAGGCGTTT
GATGCTCGCTATGAAATTAAAGTCCAAGGCTTTGGCTCAAACTTAGGAAATGTAAAAATTGTTCCTAGATCTAAGCCAGA
TGTTGAAGCTCCACCCATGTCCAGGCCTGTGCGTGGGCCAGATGGTAGATTTATAAAGTCAACAGATGGCGCCAGGCTTA
ATAGGAAGACAGAATACCCCAGTGGCTATCGAGCAGGTGTAAAAGAAGAAGTTTTAGATGCTAATACAATCCAAAGTGGA
AAACATGCTGGAAAAGTAATGACTGCGGATGGTGATAAGGTATACAGGAACGACCCGAGGTTGACCATAGAGCATAACAA
ACCTGTTGTTGAGCATTGGAATGAAGTCGGCTATAATTCAACTCGAGCTGAGAGAAATGACTTCTATAATGATACCGGCA
ATATGAGCCTGAAGTTACGCTCCGCTAACAGTTCCGAGGGTGCCAAGATGGGGGCTAGCGGGGTTAGATATAGGCAAGAC
GTTGGTCCAAACTACGAGTGA					