Detailed information of component protein


Summary

Component ID T6CP011642
Component protein type PAAR
T6SS ID (Type) T6SS00252 insolico (Type i4b)
Strain Pseudomonas putida GB-1
Replicon chromosome
Sequence Protein sequence (407 a.a.); Nucleotide sequence (1221 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PPUTGB1_RS27950
Coordinate (Strand) 3092337..3093557 (-)
NCBI ID WP_012272391.1
RefSeq NC_010322
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
PAAR_motif PF05488.15 3.8e-17 77..141
GH-E PF14410.8 8.4e-07 340..388
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 407 a.a.    

>T6CP011642 NC_010322:c3093557-3092337 [Pseudomonas putida GB-1] [PAAR]
MTAAAARLDDPIEHSSALGGLLAGLAIGAGAVLIGIAVVGTGGLGAVALAAMVGAGAATGAGIGQLIGSLSFACSETGQI
RSGSGNVYINGKPAARAHLDNAECSDHPGIPKILAQGSDSVYINGQPAARVGDRTVCDAKISAGSPNVYIGGGTETTDAI
DPEVPVWLERAVMGVGLASAFVLASPVLVVAGLVGGIAGGMAGHWAGGELFGEGSDGQKLMAFGGALLGGGIGAKGGKAF
DARYEIKVQGFGSNLGNVKIVPRSKPDVEAPPMSRPVRGPDGRFIKSTDGARLNRKTEYPSGYRAGVKEEVLDANTIQSG
KHAGKVMTADGDKVYRNDPRLTIEHNKPVVEHWNEVGYNSTRAERNDFYNDTGNMSLKLRSANSSEGAKMGASGVRYRQD
VGPNYE*

  Nucleotide sequence: 1221 bp    

>T6CP011642 NC_010322:c3093557-3092337 [Pseudomonas putida GB-1] [PAAR]
ATGACTGCGGCTGCCGCGAGATTAGACGATCCAATCGAGCACTCTAGCGCCTTAGGCGGATTACTTGCTGGTTTGGCGAT
TGGTGCAGGTGCAGTGCTCATCGGTATTGCTGTGGTTGGCACCGGCGGGCTTGGGGCGGTAGCCCTCGCTGCGATGGTGG
GCGCGGGAGCCGCTACTGGTGCTGGAATTGGTCAACTGATTGGTAGCTTATCGTTCGCCTGTAGTGAAACGGGACAAATA
CGATCAGGGTCGGGCAACGTTTATATAAATGGGAAACCTGCTGCGAGGGCGCATCTGGATAATGCCGAGTGCTCTGATCA
TCCCGGGATCCCTAAGATATTAGCTCAGGGCAGCGATTCGGTATATATAAATGGTCAGCCTGCGGCTCGAGTAGGTGACA
GAACAGTTTGCGACGCGAAAATAAGTGCGGGCTCTCCCAATGTATATATAGGTGGGGGCACCGAGACGACGGATGCCATT
GACCCGGAGGTCCCTGTCTGGTTGGAGCGTGCAGTCATGGGGGTGGGACTGGCAAGTGCATTTGTGCTGGCAAGTCCTGT
TTTGGTGGTCGCAGGGTTGGTGGGTGGTATAGCGGGTGGCATGGCAGGGCATTGGGCCGGCGGCGAGCTGTTTGGAGAGG
GCTCCGACGGCCAGAAGTTGATGGCGTTTGGTGGTGCTCTGCTTGGAGGGGGGATCGGCGCCAAGGGCGGGAAGGCGTTT
GATGCTCGCTATGAAATTAAAGTCCAAGGCTTTGGCTCAAACTTAGGAAATGTAAAAATTGTTCCTAGATCTAAGCCAGA
TGTTGAAGCTCCACCCATGTCCAGGCCTGTGCGTGGGCCAGATGGTAGATTTATAAAGTCAACAGATGGCGCCAGGCTTA
ATAGGAAGACAGAATACCCCAGTGGCTATCGAGCAGGTGTAAAAGAAGAAGTTTTAGATGCTAATACAATCCAAAGTGGA
AAACATGCTGGAAAAGTAATGACTGCGGATGGTGATAAGGTATACAGGAACGACCCGAGGTTGACCATAGAGCATAACAA
ACCTGTTGTTGAGCATTGGAATGAAGTCGGCTATAATTCAACTCGAGCTGAGAGAAATGACTTCTATAATGATACCGGCA
ATATGAGCCTGAAGTTACGCTCCGCTAACAGTTCCGAGGGTGCCAAGATGGGGGCTAGCGGGGTTAGATATAGGCAAGAC
GTTGGTCCAAACTACGAGTGA