Detailed information of component protein


Summary

Component ID T6CP002484
Component protein type TssB
T6SS ID (Type) T6SS00252 insolico (Type i4b)
Strain Pseudomonas putida GB-1
Replicon chromosome
Sequence Protein sequence (180 a.a.); Nucleotide sequence (540 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PPUTGB1_RS14060
Coordinate (Strand) 3100524..3101063 (+)
NCBI ID WP_012272397.1
RefSeq NC_010322
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

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Domain
Pfam ID
E-value
Aligned region
T6SS_VipAPF05591.141e-6112..164
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Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
No matching records found


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
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  Protein sequence: 180 a.a.    

>T6CP002484 NC_010322:3100524-3101063 [Pseudomonas putida GB-1] [TssB]
MAKKESTQHKLDRVRAPRVHITYDVDIGDAIEKKELPFVVGVLGDFSGNPLEPLPKLKDRKFVFIDRDNFNGVLKGIKPR
LTYRVDNTLAKNGTQLGVELNFNSLEDFEPQNVVKQVEPLRKLLEVRNKLADLRNKMGGNDKLEELLMDVLQNTEKLKTL
GKEFGREAEVKDPSSSDRA*

  Nucleotide sequence: 540 bp    

>T6CP002484 NC_010322:3100524-3101063 [Pseudomonas putida GB-1] [TssB]
ATGGCGAAGAAGGAAAGCACTCAGCACAAACTCGACCGCGTCCGCGCGCCTCGGGTCCATATCACCTACGACGTGGACAT
CGGCGATGCCATCGAGAAAAAGGAGCTGCCCTTCGTCGTCGGCGTACTGGGCGACTTTTCCGGCAACCCGCTGGAGCCGC
TGCCCAAGCTCAAGGACCGCAAGTTCGTCTTCATCGACCGCGACAACTTCAACGGTGTGCTCAAGGGTATCAAGCCACGC
CTGACCTACCGCGTCGACAACACCCTGGCCAAGAACGGCACCCAGCTGGGCGTGGAACTGAACTTCAACAGCCTCGAAGA
CTTCGAGCCACAGAACGTGGTCAAGCAGGTGGAGCCACTGCGCAAGCTGCTGGAAGTGCGCAACAAACTGGCCGACCTGC
GCAACAAGATGGGCGGCAACGACAAGCTCGAAGAGCTGCTGATGGACGTGCTGCAAAACACCGAAAAGCTCAAGACCCTG
GGCAAGGAATTCGGCCGTGAAGCCGAAGTGAAAGACCCATCCAGCAGCGATCGCGCCTGA