Detailed information of component protein
Summary
| Component ID | T6CP002484 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS00252  (Type i4b) |
| Strain | Pseudomonas putida GB-1 |
| Replicon | chromosome |
| Sequence | Protein sequence (180 a.a.); Nucleotide sequence (540 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PPUTGB1_RS14060 |
| Coordinate (Strand) | 3100524..3101063 (+) |
| NCBI ID | WP_012272397.1 |
| RefSeq | NC_010322 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 1e-61 | 12..164 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 180 a.a.
>T6CP002484 NC_010322:3100524-3101063 [Pseudomonas putida GB-1] [TssB]
MAKKESTQHKLDRVRAPRVHITYDVDIGDAIEKKELPFVVGVLGDFSGNPLEPLPKLKDRKFVFIDRDNFNGVLKGIKPR
LTYRVDNTLAKNGTQLGVELNFNSLEDFEPQNVVKQVEPLRKLLEVRNKLADLRNKMGGNDKLEELLMDVLQNTEKLKTL
GKEFGREAEVKDPSSSDRA*
MAKKESTQHKLDRVRAPRVHITYDVDIGDAIEKKELPFVVGVLGDFSGNPLEPLPKLKDRKFVFIDRDNFNGVLKGIKPR
LTYRVDNTLAKNGTQLGVELNFNSLEDFEPQNVVKQVEPLRKLLEVRNKLADLRNKMGGNDKLEELLMDVLQNTEKLKTL
GKEFGREAEVKDPSSSDRA*
Nucleotide sequence: 540 bp
>T6CP002484 NC_010322:3100524-3101063 [Pseudomonas putida GB-1] [TssB]
ATGGCGAAGAAGGAAAGCACTCAGCACAAACTCGACCGCGTCCGCGCGCCTCGGGTCCATATCACCTACGACGTGGACAT
CGGCGATGCCATCGAGAAAAAGGAGCTGCCCTTCGTCGTCGGCGTACTGGGCGACTTTTCCGGCAACCCGCTGGAGCCGC
TGCCCAAGCTCAAGGACCGCAAGTTCGTCTTCATCGACCGCGACAACTTCAACGGTGTGCTCAAGGGTATCAAGCCACGC
CTGACCTACCGCGTCGACAACACCCTGGCCAAGAACGGCACCCAGCTGGGCGTGGAACTGAACTTCAACAGCCTCGAAGA
CTTCGAGCCACAGAACGTGGTCAAGCAGGTGGAGCCACTGCGCAAGCTGCTGGAAGTGCGCAACAAACTGGCCGACCTGC
GCAACAAGATGGGCGGCAACGACAAGCTCGAAGAGCTGCTGATGGACGTGCTGCAAAACACCGAAAAGCTCAAGACCCTG
GGCAAGGAATTCGGCCGTGAAGCCGAAGTGAAAGACCCATCCAGCAGCGATCGCGCCTGA
ATGGCGAAGAAGGAAAGCACTCAGCACAAACTCGACCGCGTCCGCGCGCCTCGGGTCCATATCACCTACGACGTGGACAT
CGGCGATGCCATCGAGAAAAAGGAGCTGCCCTTCGTCGTCGGCGTACTGGGCGACTTTTCCGGCAACCCGCTGGAGCCGC
TGCCCAAGCTCAAGGACCGCAAGTTCGTCTTCATCGACCGCGACAACTTCAACGGTGTGCTCAAGGGTATCAAGCCACGC
CTGACCTACCGCGTCGACAACACCCTGGCCAAGAACGGCACCCAGCTGGGCGTGGAACTGAACTTCAACAGCCTCGAAGA
CTTCGAGCCACAGAACGTGGTCAAGCAGGTGGAGCCACTGCGCAAGCTGCTGGAAGTGCGCAACAAACTGGCCGACCTGC
GCAACAAGATGGGCGGCAACGACAAGCTCGAAGAGCTGCTGATGGACGTGCTGCAAAACACCGAAAAGCTCAAGACCCTG
GGCAAGGAATTCGGCCGTGAAGCCGAAGTGAAAGACCCATCCAGCAGCGATCGCGCCTGA