Detailed information of component protein


Summary

Component ID T6CP002488
Component protein type TssG
T6SS ID (Type) T6SS00252 insolico (Type i4b)
Strain Pseudomonas putida GB-1
Replicon chromosome
Sequence Protein sequence (357 a.a.); Nucleotide sequence (1071 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PPUTGB1_RS14080
Coordinate (Strand) 3104873..3105943 (+)
NCBI ID WP_012272401.1
RefSeq NC_010322
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 6.1e-103 19..333
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 357 a.a.    

>T6CP002488 NC_010322:3104873-3105943 [Pseudomonas putida GB-1] [TssG]
MASTHWRSAPGLIDQARAEPHRFEFFQLVRLLRLHYSRTGRMDLATRPHEDPLRFRTQLSLAFPASEVSDLHFEREGKLS
PAGLPLSEVQVTFMGLVGPSGVLPRPYTELLLERHVQYRDDAAHAFLDIFSHRMTTLFYEAWQKYKFHIEHERNGTSGFD
GYLLNLAGFGPRAQKLKFEEQPSVLRRELFSYFAGLLSQKPRNALNLERMLGFYFSLPIHVKQFAGRWLHLPPEQRTQLG
RRNAQLGQSAVAGKRTWDYQSCIRIELGPLSLADYQRFQPGTECYRKLVELVRFYIGAGLDFEIAPRLKREAVPRAQLGR
KGNVALGWLGWLKRPGRDAEPSRCAVFHIPYDGVAL*

  Nucleotide sequence: 1071 bp    

>T6CP002488 NC_010322:3104873-3105943 [Pseudomonas putida GB-1] [TssG]
ATGGCCAGCACGCACTGGCGATCAGCCCCTGGTCTGATCGATCAGGCCCGAGCCGAGCCGCACCGATTCGAATTCTTTCA
ATTGGTGCGCCTGCTCCGCCTGCACTACAGCCGCACCGGTCGCATGGACCTGGCAACCCGGCCCCATGAAGACCCGCTGC
GTTTCCGCACCCAGTTGTCGCTAGCATTTCCGGCCAGCGAGGTCAGCGACCTGCACTTTGAGCGCGAAGGCAAGCTATCG
CCGGCTGGCCTGCCACTGTCGGAAGTGCAGGTTACCTTCATGGGCCTGGTCGGGCCGTCGGGCGTGCTGCCGCGCCCGTA
TACCGAGTTGCTGCTCGAGCGCCATGTGCAATACCGCGACGATGCCGCCCATGCGTTTCTCGACATCTTCTCGCACCGTA
TGACCACGCTGTTCTACGAGGCCTGGCAAAAATACAAGTTCCATATCGAGCACGAGCGCAATGGCACCTCGGGTTTCGAT
GGCTACCTGCTCAACCTGGCGGGCTTCGGGCCGCGCGCGCAAAAACTGAAGTTCGAAGAACAACCGTCAGTATTGCGTCG
TGAGCTGTTCAGCTATTTTGCCGGCCTGCTCAGCCAGAAGCCGCGCAATGCGCTGAACCTCGAACGGATGCTCGGCTTCT
ATTTCTCGTTGCCGATCCACGTCAAGCAGTTCGCCGGTCGTTGGTTGCACCTGCCGCCTGAACAGCGCACCCAGCTTGGG
CGGCGCAACGCCCAGCTCGGCCAAAGCGCCGTAGCGGGCAAGCGAACCTGGGATTACCAATCGTGCATTCGCATCGAGCT
GGGCCCACTGAGCCTGGCCGATTACCAGCGTTTTCAGCCGGGCACCGAGTGCTATCGCAAGCTGGTCGAGTTGGTGCGCT
TCTATATAGGTGCCGGGCTGGACTTCGAAATCGCCCCGCGCCTCAAGCGCGAGGCAGTGCCACGCGCCCAGCTCGGCCGC
AAAGGCAATGTCGCCTTGGGCTGGCTGGGCTGGCTCAAACGCCCTGGCCGTGACGCGGAGCCTTCGCGTTGCGCCGTTTT
CCACATTCCTTACGATGGGGTCGCCTTGTGA