Detailed information of component protein
Summary
Component ID | T6CP002491 |
Component protein type | TssK |
T6SS ID (Type) | T6SS00252 (Type i4b) |
Strain | Pseudomonas putida GB-1 |
Replicon | chromosome |
Sequence | Protein sequence (448 a.a.); Nucleotide sequence (1344 bp) |
Reference |
External database links
Locus tag (Gene) | PPUTGB1_RS14095 |
Coordinate (Strand) | 3109281..3110624 (+) |
NCBI ID | WP_012272404.1 |
RefSeq | NC_010322 |
Uniprot ID | - |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS_VasE | PF05936.14 | 8e-136 | 19..445 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
- | - |
Protein sequence: 448 a.a.
>T6CP002491 NC_010322:3109281-3110624 [Pseudomonas putida GB-1] [TssK]
MSKQSRVMWSEGMFLLPQHFQYQDEFHQHQLAEATLRSTPFHWGVQALQVDEDALANGSLQLKRLKLVFPDGSLYDAPQH
DPLPAARDLKDLLKANDLKVYAALKLPEPFGLNYVEDGHEHKAARRFRKQFDTLPDLNEGELENEITSLRLNVVMLVDGD
SLDGYSYCPLAKLTRNSMGGFNLDPHFVHPTLHLGSHETITSLGKRLLGALQAKSKALSGRRRERADQIAEFGSSDVTLF
WLLNTVNRAHPQLAHLLAHPRLHPERLYLFLADLAGGLLTFTLDTQLSDIPEYDHQDPAASLVKLDEMIRVMLDNVVPNQ
CIVINLTQTKPSHWQGQLHDPRLAEADFYIAVHADMPGASLLELVPRAFKVGSPEDIEVVVNSAMPGVTLNHAARLPNAI
PVRLDNQYFAIEPHGTVYERMINAQAICFYAPSAFTNLKLELMAVLK*
MSKQSRVMWSEGMFLLPQHFQYQDEFHQHQLAEATLRSTPFHWGVQALQVDEDALANGSLQLKRLKLVFPDGSLYDAPQH
DPLPAARDLKDLLKANDLKVYAALKLPEPFGLNYVEDGHEHKAARRFRKQFDTLPDLNEGELENEITSLRLNVVMLVDGD
SLDGYSYCPLAKLTRNSMGGFNLDPHFVHPTLHLGSHETITSLGKRLLGALQAKSKALSGRRRERADQIAEFGSSDVTLF
WLLNTVNRAHPQLAHLLAHPRLHPERLYLFLADLAGGLLTFTLDTQLSDIPEYDHQDPAASLVKLDEMIRVMLDNVVPNQ
CIVINLTQTKPSHWQGQLHDPRLAEADFYIAVHADMPGASLLELVPRAFKVGSPEDIEVVVNSAMPGVTLNHAARLPNAI
PVRLDNQYFAIEPHGTVYERMINAQAICFYAPSAFTNLKLELMAVLK*
Nucleotide sequence: 1344 bp
>T6CP002491 NC_010322:3109281-3110624 [Pseudomonas putida GB-1] [TssK]
ATGAGCAAGCAGAGCCGGGTGATGTGGTCGGAAGGCATGTTCCTGCTGCCCCAGCACTTCCAGTACCAGGACGAGTTCCA
CCAGCACCAGTTGGCTGAGGCGACCCTGCGCAGTACTCCTTTCCATTGGGGTGTACAGGCGCTGCAGGTGGACGAAGACG
CCCTGGCCAACGGTTCGCTGCAGCTCAAGCGCCTGAAGCTGGTGTTCCCTGATGGCAGCCTGTACGACGCTCCGCAGCAC
GATCCGCTGCCGGCCGCGCGTGACCTCAAGGACCTGCTCAAGGCCAACGACCTGAAGGTTTATGCCGCGCTCAAGCTGCC
CGAGCCATTCGGCCTCAATTACGTCGAGGATGGCCACGAGCACAAGGCCGCACGGCGCTTTCGCAAGCAGTTCGACACCC
TGCCCGACCTTAATGAAGGTGAGCTGGAGAACGAGATCACCAGCCTGCGCCTGAACGTGGTCATGCTGGTCGACGGCGAC
AGCCTCGATGGCTACAGCTACTGCCCGCTGGCGAAGCTGACACGCAACAGCATGGGCGGCTTCAACCTCGACCCGCATTT
CGTCCACCCTACCCTGCACCTGGGCAGCCACGAAACCATCACCAGCCTCGGCAAACGCCTGCTCGGTGCCCTGCAGGCCA
AGAGCAAGGCGCTGTCCGGCCGACGCCGCGAGCGCGCCGACCAGATCGCCGAGTTCGGCTCCAGCGACGTCACCTTGTTC
TGGCTGTTGAACACGGTCAACCGTGCCCACCCGCAATTGGCGCATCTGCTGGCCCATCCGCGCCTGCACCCGGAGCGCCT
GTACCTGTTCCTCGCCGACCTGGCCGGCGGGCTCCTGACCTTCACCCTGGACACCCAGCTCAGCGACATCCCCGAGTACG
ACCACCAGGACCCTGCGGCATCGCTGGTGAAACTGGACGAAATGATCCGCGTAATGCTCGACAACGTGGTGCCCAACCAG
TGCATCGTCATCAACCTGACCCAGACCAAACCGTCCCATTGGCAAGGCCAGCTGCACGACCCACGCCTGGCCGAAGCCGA
CTTCTATATTGCCGTGCACGCCGACATGCCCGGTGCCAGCCTGCTGGAACTGGTGCCCCGAGCGTTCAAGGTCGGCTCGC
CGGAAGACATCGAGGTGGTGGTCAACAGCGCCATGCCTGGCGTCACCCTCAATCATGCCGCGCGGTTACCGAACGCGATT
CCGGTGCGCCTGGATAACCAGTATTTCGCCATCGAGCCGCACGGCACTGTGTATGAGCGAATGATCAATGCCCAGGCCAT
CTGCTTCTATGCGCCCAGCGCCTTTACCAACCTCAAGCTTGAACTGATGGCGGTGCTCAAATGA
ATGAGCAAGCAGAGCCGGGTGATGTGGTCGGAAGGCATGTTCCTGCTGCCCCAGCACTTCCAGTACCAGGACGAGTTCCA
CCAGCACCAGTTGGCTGAGGCGACCCTGCGCAGTACTCCTTTCCATTGGGGTGTACAGGCGCTGCAGGTGGACGAAGACG
CCCTGGCCAACGGTTCGCTGCAGCTCAAGCGCCTGAAGCTGGTGTTCCCTGATGGCAGCCTGTACGACGCTCCGCAGCAC
GATCCGCTGCCGGCCGCGCGTGACCTCAAGGACCTGCTCAAGGCCAACGACCTGAAGGTTTATGCCGCGCTCAAGCTGCC
CGAGCCATTCGGCCTCAATTACGTCGAGGATGGCCACGAGCACAAGGCCGCACGGCGCTTTCGCAAGCAGTTCGACACCC
TGCCCGACCTTAATGAAGGTGAGCTGGAGAACGAGATCACCAGCCTGCGCCTGAACGTGGTCATGCTGGTCGACGGCGAC
AGCCTCGATGGCTACAGCTACTGCCCGCTGGCGAAGCTGACACGCAACAGCATGGGCGGCTTCAACCTCGACCCGCATTT
CGTCCACCCTACCCTGCACCTGGGCAGCCACGAAACCATCACCAGCCTCGGCAAACGCCTGCTCGGTGCCCTGCAGGCCA
AGAGCAAGGCGCTGTCCGGCCGACGCCGCGAGCGCGCCGACCAGATCGCCGAGTTCGGCTCCAGCGACGTCACCTTGTTC
TGGCTGTTGAACACGGTCAACCGTGCCCACCCGCAATTGGCGCATCTGCTGGCCCATCCGCGCCTGCACCCGGAGCGCCT
GTACCTGTTCCTCGCCGACCTGGCCGGCGGGCTCCTGACCTTCACCCTGGACACCCAGCTCAGCGACATCCCCGAGTACG
ACCACCAGGACCCTGCGGCATCGCTGGTGAAACTGGACGAAATGATCCGCGTAATGCTCGACAACGTGGTGCCCAACCAG
TGCATCGTCATCAACCTGACCCAGACCAAACCGTCCCATTGGCAAGGCCAGCTGCACGACCCACGCCTGGCCGAAGCCGA
CTTCTATATTGCCGTGCACGCCGACATGCCCGGTGCCAGCCTGCTGGAACTGGTGCCCCGAGCGTTCAAGGTCGGCTCGC
CGGAAGACATCGAGGTGGTGGTCAACAGCGCCATGCCTGGCGTCACCCTCAATCATGCCGCGCGGTTACCGAACGCGATT
CCGGTGCGCCTGGATAACCAGTATTTCGCCATCGAGCCGCACGGCACTGTGTATGAGCGAATGATCAATGCCCAGGCCAT
CTGCTTCTATGCGCCCAGCGCCTTTACCAACCTCAAGCTTGAACTGATGGCGGTGCTCAAATGA