Detailed information of component protein
Summary
| Component ID | T6CP002490 |
| Component protein type | TssJ |
| T6SS ID (Type) | T6SS00252  (Type i4b) |
| Strain | Pseudomonas putida GB-1 |
| Replicon | chromosome |
| Sequence | Protein sequence (241 a.a.); Nucleotide sequence (723 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PPUTGB1_RS14090 |
| Coordinate (Strand) | 3108562..3109284 (+) |
| NCBI ID | WP_012272403.1 |
| RefSeq | NC_010322 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS-SciN | PF12790.9 | 3.1e-29 | 47..161 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 241 a.a.
>T6CP002490 NC_010322:3108562-3109284 [Pseudomonas putida GB-1] [TssJ]
MQHKHIAFKRLTTAALLLALAGCGVTDRIGKRMEDSWAADMLADSEKVILTSDGGNQLNPDTEGKPLSVVMRVYQLTDLE
RFAATDAETLWDTPEKALGNTLVEAREITLLPGIGQIDQWPLANSARYVGVAAFFRDEQGARWKVAFDANSLRKDGIWFS
SDGLRVLVDKTEISAMRGVDVLNKPPTADQLAAAQKAKDAAPTLTDKVQDAVIQKASDAASQSASNAMDSTFNSLVDSVK
*
MQHKHIAFKRLTTAALLLALAGCGVTDRIGKRMEDSWAADMLADSEKVILTSDGGNQLNPDTEGKPLSVVMRVYQLTDLE
RFAATDAETLWDTPEKALGNTLVEAREITLLPGIGQIDQWPLANSARYVGVAAFFRDEQGARWKVAFDANSLRKDGIWFS
SDGLRVLVDKTEISAMRGVDVLNKPPTADQLAAAQKAKDAAPTLTDKVQDAVIQKASDAASQSASNAMDSTFNSLVDSVK
*
Nucleotide sequence: 723 bp
>T6CP002490 NC_010322:3108562-3109284 [Pseudomonas putida GB-1] [TssJ]
ATGCAACACAAGCACATCGCCTTCAAGCGCCTGACCACCGCCGCCCTGCTGCTGGCGCTGGCGGGCTGCGGGGTCACCGA
CCGTATCGGCAAACGCATGGAGGACAGCTGGGCGGCCGACATGCTGGCTGACAGCGAGAAGGTCATCCTGACCTCCGACG
GCGGCAACCAGCTCAACCCCGATACCGAGGGCAAGCCGCTGTCGGTGGTGATGCGCGTGTACCAGCTGACCGACCTTGAG
CGCTTCGCCGCAACCGATGCCGAAACCCTGTGGGATACCCCGGAAAAGGCACTGGGCAATACCCTGGTGGAAGCCCGCGA
GATCACCCTGCTACCGGGCATTGGCCAGATCGACCAGTGGCCTCTGGCCAATAGCGCTCGCTACGTCGGCGTGGCGGCGT
TCTTCCGTGATGAACAAGGCGCACGCTGGAAAGTCGCCTTCGACGCAAACTCGCTGCGCAAGGACGGCATCTGGTTCTCA
TCCGACGGGCTGCGGGTACTGGTGGATAAAACCGAAATCAGTGCCATGCGGGGCGTGGATGTGCTGAACAAACCCCCGAC
TGCCGACCAGCTCGCGGCGGCGCAGAAGGCCAAGGATGCCGCCCCGACGCTCACCGACAAGGTGCAGGACGCGGTCATCC
AAAAAGCCAGCGACGCCGCCAGCCAGTCGGCCAGCAACGCCATGGATTCAACCTTCAACTCTTTAGTGGATAGCGTCAAA
TGA
ATGCAACACAAGCACATCGCCTTCAAGCGCCTGACCACCGCCGCCCTGCTGCTGGCGCTGGCGGGCTGCGGGGTCACCGA
CCGTATCGGCAAACGCATGGAGGACAGCTGGGCGGCCGACATGCTGGCTGACAGCGAGAAGGTCATCCTGACCTCCGACG
GCGGCAACCAGCTCAACCCCGATACCGAGGGCAAGCCGCTGTCGGTGGTGATGCGCGTGTACCAGCTGACCGACCTTGAG
CGCTTCGCCGCAACCGATGCCGAAACCCTGTGGGATACCCCGGAAAAGGCACTGGGCAATACCCTGGTGGAAGCCCGCGA
GATCACCCTGCTACCGGGCATTGGCCAGATCGACCAGTGGCCTCTGGCCAATAGCGCTCGCTACGTCGGCGTGGCGGCGT
TCTTCCGTGATGAACAAGGCGCACGCTGGAAAGTCGCCTTCGACGCAAACTCGCTGCGCAAGGACGGCATCTGGTTCTCA
TCCGACGGGCTGCGGGTACTGGTGGATAAAACCGAAATCAGTGCCATGCGGGGCGTGGATGTGCTGAACAAACCCCCGAC
TGCCGACCAGCTCGCGGCGGCGCAGAAGGCCAAGGATGCCGCCCCGACGCTCACCGACAAGGTGCAGGACGCGGTCATCC
AAAAAGCCAGCGACGCCGCCAGCCAGTCGGCCAGCAACGCCATGGATTCAACCTTCAACTCTTTAGTGGATAGCGTCAAA
TGA