Detailed information of component protein


Summary

Component ID T6CP002496
Component protein type TssA
T6SS ID (Type) T6SS00252 insolico (Type i4b)
Strain Pseudomonas putida GB-1
Replicon chromosome
Sequence Protein sequence (366 a.a.); Nucleotide sequence (1098 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PPUTGB1_RS14125
Coordinate (Strand) 3119309..3120406 (+)
NCBI ID WP_012272410.1
RefSeq NC_010322
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 5e-30 20..133
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 366 a.a.    

>T6CP002496 NC_010322:3119309-3120406 [Pseudomonas putida GB-1] [TssA]
MPEILNDLSLATLAAPIEGGSGEDLSFSALFDQIKEARRADPDYLTQGDWQTDLKTADWEQVINLSAQGLAQQSKDLMLV
AWLSEGLAQREHFEGITFGLELTEQLLDTFWDTLFPTLEDGLDERAARLSWLKTTLTDIAGGLPITQGQHFGVLRYDESR
HVENLALQNPKAMQTALNEGKINAEIFQRSVALSDTDHLRAKALQIGTSLNACKRLQASADRLFGHEAPSFASLADMLSR
ASQLAEKLLKDRGVELHPAAVAVAEPEAIFVSTDAAGEPMNTPVQASAPAPMRTTPLTRDEAFTMLAGIAQFFKQSEPQS
PVPYLIERAIKWGNMPLEGWLSDVIKDSNVVDNIRDVLGTREPRS*

  Nucleotide sequence: 1098 bp    

>T6CP002496 NC_010322:3119309-3120406 [Pseudomonas putida GB-1] [TssA]
ATGCCTGAAATCCTCAATGACCTCTCGCTGGCCACACTGGCCGCACCCATCGAAGGTGGCAGTGGCGAAGACTTGAGCTT
CTCTGCCTTGTTCGACCAGATCAAGGAAGCCCGCCGGGCGGACCCTGACTACCTGACCCAGGGCGACTGGCAAACCGACT
TGAAGACTGCCGACTGGGAGCAGGTAATCAACCTGTCGGCTCAAGGGTTGGCGCAGCAAAGCAAAGACTTGATGCTGGTG
GCCTGGCTCAGCGAGGGCCTGGCCCAGCGTGAGCACTTCGAAGGCATCACTTTTGGCCTAGAGCTGACCGAACAGCTTCT
GGATACCTTCTGGGACACCCTGTTCCCAACGCTTGAAGACGGCCTGGACGAGCGCGCGGCGCGGCTGTCCTGGCTGAAGA
CCACGCTCACCGACATTGCCGGTGGCTTGCCCATTACCCAAGGGCAGCATTTTGGCGTGTTGCGCTATGACGAGTCACGC
CACGTCGAAAACCTCGCCCTGCAGAACCCCAAGGCAATGCAGACAGCACTGAACGAAGGCAAGATCAACGCCGAGATTTT
CCAGCGCTCGGTAGCGCTGAGCGACACTGATCACCTGCGTGCCAAGGCGCTGCAGATCGGCACCAGCCTGAATGCGTGCA
AACGCCTGCAGGCCAGCGCCGACCGCCTGTTCGGCCACGAGGCGCCCAGCTTCGCCAGCCTTGCCGACATGCTGTCGCGC
GCCAGCCAGCTGGCGGAGAAACTGCTCAAGGATCGCGGCGTCGAGCTGCACCCCGCAGCGGTGGCGGTAGCAGAACCCGA
GGCCATCTTTGTCTCTACTGACGCAGCAGGTGAACCGATGAACACGCCCGTCCAGGCCTCTGCGCCTGCCCCTATGCGCA
CGACACCACTGACCCGCGACGAGGCTTTCACCATGCTTGCGGGCATCGCCCAGTTTTTCAAGCAAAGCGAGCCGCAGAGC
CCGGTACCTTACTTGATCGAACGTGCGATCAAGTGGGGCAACATGCCGTTGGAGGGCTGGCTGAGCGATGTGATCAAAGA
CAGCAACGTGGTGGACAACATTCGTGATGTGCTAGGCACTCGCGAACCAAGGTCCTGA