Detailed information of component protein


Summary

Component ID T6CP002494
Component protein type TssM
T6SS ID (Type) T6SS00252 insolico (Type i4b)
Strain Pseudomonas putida GB-1
Replicon chromosome
Sequence Protein sequence (832 a.a.); Nucleotide sequence (2496 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PPUTGB1_RS14115
Coordinate (Strand) 3116067..3118562 (+)
NCBI ID WP_012272408.1
RefSeq NC_010322
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 3.2e-73 189..446
IcmF-related PF06761.14 7.6e-16 498..696
OmpA PF00691.22 1.5e-14 716..808
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 832 a.a.    

>T6CP002494 NC_010322:3116067-3118562 [Pseudomonas putida GB-1] [TssM]
MNKIKYYCLRYQPYLLGVAFFLAIFLVWAIGRALGFASLHSLLAGIGAFLLLSAGYVLLLYRGAGQHHNLEGLLRDDADQ
AVLSATPADREEVSLLRERLLQSIERLHSNKARGASAKDALYALPWYLVIGQPAAGKSTMILQSGLNFPYAEREGARVAG
LGGTRNCDWFFSSEAVLLDTAGRYMNSPEEAGKWRGFLQLLRQHRQRRPLNGLIVSVSIADILHGSAEDQERVAKRLRER
IQESCALLEVRLPIYLVFTKCDLIPGFTPFYRQLDDAARGEVMGKTFSHKGYEQADWGQRFGNAMDELASYWRQVAGQQL
VHQDIQVTRQNNAAYRFPLELAALKPRLQQFVDSLLRANPYQNAELLRGFYFTAALQADEAQWGSHGQHVAERFALEQVE
GSGTAGSQPAPLFINSLFRKVIIPDQHLVALYTSNHRERRRKAGWVGAAGLAALVLCSLWGWSYLNNRATLASIAGELAQ
AKADDQAGSGQYTAWRSLDRLRFWAAHYYQQHHEQGVPLGMRLGLYQGHAVEPLLRSRYFATLQNVMLKPTADNLTRTLY
LLTTLKVYQRNTRELQPVSGVDSVEAEALPHDNRAQSIADFGKATLDTYVMLSQAMREKADPAFLKAHLPDYWYPAIARH
TGKRMAAAGSDASGDQDYLYASRQITFYSDQIREPDVPRILDNAFLMSSSRNYIDSLRAQSLRSIETITLESDTLFAFGR
ADFQSLKNEGQNQLSAIASKLLNTPNIGKVVISGHADQLGDSQGNLQVSKQRAQTIRTYLVGKGVPAELVVAQGEGSRKP
LVNCDMQQPRAQLIKCLEPNRRVEIEVRGLN*

  Nucleotide sequence: 2496 bp    

>T6CP002494 NC_010322:3116067-3118562 [Pseudomonas putida GB-1] [TssM]
ATGAACAAGATCAAGTACTACTGCCTGCGCTACCAACCCTACCTGCTGGGTGTGGCATTCTTCCTGGCGATCTTCCTGGT
CTGGGCCATCGGCCGTGCATTGGGCTTTGCCTCGCTGCACAGCTTGCTGGCGGGTATCGGTGCGTTTCTGCTGCTGTCGG
CGGGCTATGTACTGTTGCTGTACCGCGGTGCTGGCCAGCACCACAACCTCGAAGGCCTGCTGCGCGACGACGCCGACCAG
GCCGTACTCAGCGCCACCCCGGCCGACCGGGAAGAGGTCAGCCTGTTGCGCGAGCGCCTGCTGCAGAGCATCGAGCGCCT
GCACAGCAACAAAGCGCGCGGCGCCTCGGCCAAGGACGCGCTGTATGCCCTGCCCTGGTACCTGGTGATCGGCCAGCCGG
CCGCGGGCAAGAGCACGATGATTCTGCAGTCGGGCCTGAACTTCCCCTACGCCGAGCGCGAAGGCGCACGGGTCGCAGGC
CTGGGCGGCACGCGCAACTGCGACTGGTTCTTCAGCTCCGAAGCGGTGCTGCTGGACACCGCCGGGCGCTACATGAACAG
CCCCGAAGAAGCCGGCAAGTGGCGTGGCTTCTTGCAACTGCTGCGCCAGCACCGCCAGCGCCGCCCGCTCAACGGTTTGA
TCGTCAGCGTCAGCATCGCCGACATCCTGCATGGCTCGGCCGAGGACCAGGAGCGCGTGGCCAAACGCCTGCGCGAACGC
ATCCAGGAAAGCTGCGCACTGCTCGAAGTGCGCCTGCCCATCTATCTGGTCTTCACCAAGTGCGATCTGATCCCCGGTTT
CACGCCGTTCTATCGCCAGCTGGACGACGCTGCGCGTGGTGAAGTGATGGGCAAAACCTTCTCGCACAAGGGTTACGAGC
AGGCCGACTGGGGCCAGCGCTTTGGCAACGCGATGGACGAGCTGGCCAGTTACTGGCGACAGGTGGCTGGCCAACAACTG
GTACACCAGGACATTCAGGTCACTCGGCAGAACAACGCGGCCTATCGCTTCCCGCTGGAGCTGGCCGCGCTCAAGCCGCG
CCTGCAGCAATTCGTCGACAGCCTGTTGCGTGCCAACCCCTACCAGAATGCAGAGTTGCTGCGCGGGTTCTATTTCACCG
CTGCGCTGCAAGCCGACGAGGCCCAGTGGGGCAGCCACGGCCAGCATGTGGCCGAACGCTTCGCACTCGAGCAGGTTGAA
GGTTCTGGCACTGCCGGCAGCCAGCCAGCCCCCCTGTTCATCAACAGCCTGTTCCGCAAGGTCATCATTCCCGACCAGCA
CCTGGTGGCGCTGTACACCAGCAACCACCGCGAGCGCCGGCGCAAGGCCGGGTGGGTTGGCGCCGCCGGCCTGGCAGCGC
TGGTGCTCTGCAGCCTGTGGGGCTGGTCGTACCTGAACAACCGCGCCACCCTAGCCAGCATTGCCGGCGAGCTGGCTCAG
GCCAAGGCCGACGACCAGGCTGGCAGCGGCCAGTACACCGCCTGGAGAAGCCTTGACCGCTTGCGCTTCTGGGCCGCGCA
CTACTATCAGCAACACCACGAGCAGGGCGTGCCGCTTGGCATGCGCCTGGGCTTGTACCAGGGCCATGCGGTCGAGCCGC
TGCTGCGCAGCCGCTACTTCGCCACGCTGCAGAACGTGATGCTCAAGCCCACGGCCGATAACCTGACCCGTACCCTGTAC
CTGTTGACCACGCTCAAGGTCTACCAACGCAACACCCGCGAGCTGCAGCCGGTAAGCGGCGTCGACAGCGTCGAGGCCGA
GGCGCTGCCGCATGACAACCGCGCCCAGTCGATCGCCGACTTCGGCAAAGCGACCCTGGACACCTACGTGATGCTCTCGC
AGGCAATGCGCGAGAAGGCTGACCCTGCGTTCCTCAAGGCGCACCTACCGGACTACTGGTACCCGGCCATCGCCCGCCAC
ACCGGCAAGCGCATGGCCGCAGCCGGTAGCGACGCCAGCGGCGACCAGGACTACCTGTACGCCAGCCGCCAGATCACCTT
CTACAGCGACCAGATCCGTGAGCCGGACGTGCCACGCATCCTCGACAACGCCTTCCTGATGTCCAGCTCACGCAACTACA
TCGACAGCCTGCGGGCCCAGTCGCTGCGCTCGATCGAGACCATCACGCTGGAATCCGACACCCTGTTCGCCTTTGGCCGC
GCCGACTTCCAGAGCCTGAAGAACGAAGGCCAGAACCAACTGAGCGCGATTGCCAGCAAGCTGTTGAACACCCCGAACAT
CGGCAAGGTGGTCATCTCTGGCCACGCCGATCAGCTCGGCGACAGCCAGGGCAACCTGCAGGTTTCGAAGCAACGGGCGC
AAACCATCCGCACCTACCTGGTCGGCAAGGGCGTGCCCGCCGAGCTGGTGGTCGCGCAAGGCGAAGGCAGCCGCAAACCA
CTGGTCAACTGCGACATGCAACAACCGCGGGCGCAATTGATCAAGTGCCTGGAGCCCAACCGCCGGGTGGAAATCGAAGT
GCGTGGGCTGAACTGA