Detailed information NTG0089143

Bioinformatically predicted

Overview

• Name: comEA
• Type: Machinery gene
• Locus tag: OCU30_RS07690
• Genome accession: NZ_AP024887
• Coordinates: 1627468..1627701 (-)
• Length: 77 a.a.
• NCBI ID: WP_235861836.1
• Uniprot ID: -
• Organism: Vibrio palustris strain CECT 9027
• Function: dsDNA binding (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1622468..1632701

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU30_RS07665	lapB	1622690..1623859 (-)	1170	WP_077312518.1	lipopolysaccharide assembly protein LapB	-
OCU30_RS07670	-	1623885..1624157 (-)	273	WP_077313643.1	LapA family protein	-
OCU30_RS07675	ihfB	1624296..1624580 (-)	285	WP_077312516.1	integration host factor subunit beta	-
OCU30_RS07680	rpsA	1624818..1626494 (-)	1677	WP_077312515.1	30S ribosomal protein S1	-
OCU30_RS07685	cmk	1626610..1627287 (-)	678	WP_077312513.1	(d)CMP kinase	-
OCU30_RS07690	comEA	1627468..1627701 (-)	234	WP_235861836.1	ComEA family DNA-binding protein	Machinery gene
OCU30_RS07695	ppiD	1627902..1629755 (-)	1854	WP_077312509.1	peptidylprolyl isomerase	-
OCU30_RS07700	-	1629900..1630175 (-)	276	WP_077313640.1	HU family DNA-binding protein	-

Sequence

Protein

• Length: 77 a.a.
• Molecular weight: 8148.21 Da
• Isoelectric Point: 6.2567

>NTDB_id=89143 OCU30_RS07690 WP_235861836.1 1627468..1627701(-) (comEA) [Vibrio palustris strain CECT 9027]
MADSPQTGDEIQVTVNVNTASAEELATLLSGVGLSKANAIVMYRDKNGPFESQDELSKVKGIGTATIAKNAQRLRVK

Nucleotide

• Length: 234 bp

>NTDB_id=89143 OCU30_RS07690 WP_235861836.1 1627468..1627701(-) (comEA) [Vibrio palustris strain CECT 9027]
ATGGCTGACTCACCACAGACTGGTGATGAAATTCAAGTCACTGTCAACGTTAATACGGCGTCTGCAGAAGAGTTAGCGAC
ATTATTAAGTGGGGTTGGCCTGTCTAAAGCGAATGCCATCGTGATGTATCGTGATAAAAATGGGCCATTTGAGAGTCAAG
ATGAACTCAGTAAAGTTAAAGGGATCGGTACTGCGACCATAGCAAAAAACGCGCAACGCTTACGCGTGAAGTAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix motif (HHH_3) (12-75)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEA	Vibrio cholerae strain A1552	60.274	94.805	0.571
comEA	Vibrio cholerae C6706	60.274	94.805	0.571
comEA	Vibrio parahaemolyticus RIMD 2210633	57.812	83.117	0.481
comEA	Vibrio campbellii strain DS40M4	56.25	83.117	0.468
comEA	Acinetobacter baylyi ADP1	54.688	83.117	0.455
comE	Neisseria gonorrhoeae MS11	55.357	72.727	0.403
comE	Neisseria gonorrhoeae MS11	55.357	72.727	0.403
comE	Neisseria gonorrhoeae MS11	55.357	72.727	0.403
comE	Neisseria gonorrhoeae MS11	55.357	72.727	0.403
comEA	Acinetobacter baumannii strain A118	50	77.922	0.39
comEA	Bacillus subtilis subsp. subtilis str. 168	47.619	81.818	0.39
comEA/comE1	Glaesserella parasuis strain SC1401	53.571	72.727	0.39
comEA	Staphylococcus aureus MW2	54.545	71.429	0.39
comEA	Staphylococcus aureus N315	54.545	71.429	0.39
comE1/comEA	Haemophilus influenzae Rd KW20	48.333	77.922	0.377
comEA	Acinetobacter baumannii D1279779	48.333	77.922	0.377
comEA	Legionella pneumophila str. Paris	37.662	100	0.377
comEA	Legionella pneumophila strain ERS1305867	37.662	100	0.377
comEA/celA/cilE	Streptococcus mitis NCTC 12261	50.909	71.429	0.364
comEA/celA/cilE	Streptococcus pneumoniae Rx1	50.909	71.429	0.364
comEA/celA/cilE	Streptococcus pneumoniae D39	50.909	71.429	0.364
comEA/celA/cilE	Streptococcus pneumoniae R6	50.909	71.429	0.364
comEA/celA/cilE	Streptococcus pneumoniae TIGR4	50.909	71.429	0.364