NTDB

Overview

Name	pilA	Type	Machinery gene
Locus tag	QVG61_RS10535	Genome accession	NZ_CP128988
Coordinates	2284872..2285303 (+)	Length	143 a.a.
NCBI ID	WP_289930596.1	Uniprot ID	-
Organism	Thiohalobacter sp. IOR34
Function	type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2279872..2290303

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QVG61_RS10515 (QVG61_10515)	sucC	2279889..2281052 (-)	1164	WP_289930592.1	ADP-forming succinate--CoA ligase subunit beta	-
QVG61_RS10520 (QVG61_10520)	-	2281186..2281419 (+)	234	WP_289930593.1	PP0621 family protein	-
QVG61_RS10525 (QVG61_10525)	-	2281427..2283091 (+)	1665	WP_289930594.1	ATP-binding protein	-
QVG61_RS10530 (QVG61_10530)	pilR	2283088..2284452 (+)	1365	WP_289930595.1	sigma-54 dependent transcriptional regulator	Regulator
QVG61_RS10535 (QVG61_10535)	pilA	2284872..2285303 (+)	432	WP_289930596.1	pilin	Machinery gene
QVG61_RS10540 (QVG61_10540)	pilB	2285578..2287293 (+)	1716	WP_289930597.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QVG61_RS10545 (QVG61_10545)	pilC	2287300..2288520 (+)	1221	WP_289930598.1	type II secretion system F family protein	Machinery gene
QVG61_RS10550 (QVG61_10550)	pilD	2288558..2289433 (+)	876	WP_289930599.1	A24 family peptidase	Machinery gene
QVG61_RS10555 (QVG61_10555)	coaE	2289470..2290087 (+)	618	WP_289930600.1	dephospho-CoA kinase	-

Sequence

Protein

Download Length: 143 a.a. Molecular weight: 14320.11 Da Isoelectric Point: 4.3627

                                >NTDB_id=850228 QVG61_RS10535 WP_289930596.1 2284872..2285303(+) (pilA) [Thiohalobacter sp. IOR34]

MKNTQQGFTLIELMIVVAIIGILAAIAIPAYQDYTVRSRVTEGLSLAAAAKATVAENAAAANSNLDAGWTAPSATSNVSS

VAVDSSDGTITITYTAAAGNGTITLVPTAGGAALTAGTPPTDAIAWDCTGGTLADKYRPSNCR

Nucleotide

Download Length: 432 bp

                                >NTDB_id=850228 QVG61_RS10535 WP_289930596.1 2284872..2285303(+) (pilA) [Thiohalobacter sp. IOR34]

ATGAAGAACACACAGCAGGGTTTCACTCTCATCGAACTCATGATCGTGGTCGCGATCATCGGCATCCTGGCCGCGATTGC

CATCCCGGCTTATCAGGACTACACCGTCCGCTCCCGTGTTACTGAGGGCCTCAGCCTGGCTGCGGCTGCCAAGGCAACGG

TTGCTGAAAATGCTGCCGCCGCCAACTCAAACCTGGATGCCGGCTGGACCGCACCCAGCGCCACCAGCAACGTGTCTTCC

GTTGCAGTGGATAGCAGCGATGGCACCATTACCATCACCTATACCGCCGCTGCCGGCAATGGCACCATTACCCTGGTTCC

GACTGCAGGTGGTGCGGCATTGACTGCAGGCACGCCGCCGACCGATGCAATCGCATGGGACTGCACGGGCGGAACACTTG

CTGACAAATATCGTCCCAGCAATTGCCGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)

Pilin (bacterial filament) (Pilin)

(36-143)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilA	Ralstonia pseudosolanacearum GMI1000	54.375	100	0.608
pilA2	Legionella pneumophila str. Paris	58.741	100	0.587
pilA2	Legionella pneumophila strain ERS1305867	58.741	100	0.587
comP	Acinetobacter baylyi ADP1	48.408	100	0.531
pilE	Neisseria elongata subsp. glycolytica ATCC 29315	40	100	0.531
pilA	Acinetobacter baumannii strain A118	44.366	99.301	0.441
pilA/pilAI	Pseudomonas stutzeri DSM 10701	40.94	100	0.427
pilA	Pseudomonas aeruginosa PAK	39.61	100	0.427
pilA/pilAII	Pseudomonas stutzeri DSM 10701	40.541	100	0.42
pilE	Neisseria gonorrhoeae strain FA1090	35.583	100	0.406
pilE	Neisseria gonorrhoeae MS11	36.478	100	0.406
pilA	Vibrio cholerae strain A1552	39.583	100	0.399
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	39.583	100	0.399
pilA	Vibrio cholerae C6706	39.583	100	0.399
pilA/pilA1	Eikenella corrodens VA1	44.094	88.811	0.392

Detailed information NTG0850228