Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QVG61_RS10545 Genome accession   NZ_CP128988
Coordinates   2287300..2288520 (+) Length   406 a.a.
NCBI ID   WP_289930598.1    Uniprot ID   -
Organism   Thiohalobacter sp. IOR34     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2282300..2293520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVG61_RS10530 (QVG61_10530) pilR 2283088..2284452 (+) 1365 WP_289930595.1 sigma-54 dependent transcriptional regulator Regulator
  QVG61_RS10535 (QVG61_10535) pilA 2284872..2285303 (+) 432 WP_289930596.1 pilin Machinery gene
  QVG61_RS10540 (QVG61_10540) pilB 2285578..2287293 (+) 1716 WP_289930597.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QVG61_RS10545 (QVG61_10545) pilC 2287300..2288520 (+) 1221 WP_289930598.1 type II secretion system F family protein Machinery gene
  QVG61_RS10550 (QVG61_10550) pilD 2288558..2289433 (+) 876 WP_289930599.1 A24 family peptidase Machinery gene
  QVG61_RS10555 (QVG61_10555) coaE 2289470..2290087 (+) 618 WP_289930600.1 dephospho-CoA kinase -
  QVG61_RS10560 (QVG61_10560) zapD 2290574..2291344 (+) 771 WP_289930601.1 cell division protein ZapD -
  QVG61_RS10565 (QVG61_10565) yacG 2291702..2291899 (+) 198 WP_289930602.1 DNA gyrase inhibitor YacG -
  QVG61_RS10570 (QVG61_10570) - 2291998..2292726 (-) 729 WP_289930603.1 DUF72 domain-containing protein -
  QVG61_RS10575 (QVG61_10575) - 2292736..2293206 (-) 471 WP_289930604.1 hypothetical protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44012.93 Da        Isoelectric Point: 9.8186

>NTDB_id=850230 QVG61_RS10545 WP_289930598.1 2287300..2288520(+) (pilC) [Thiohalobacter sp. IOR34]
MAEKALKQGLFAWEGTDKRGNRVKGESRAASQAMIKADLRRQGITPIKVRKKSALASASKKKKILPKDIAIFTRQLATMM
SAGVPLVQAFEIIGKGHENPAMQDLVLTIKNDVEAGNNLRDALAKHPLYFDELVCNLVEAGEAAGVLDTLLDKIATYKEK
TEALKSKIKKALFYPTAVMVVAFIVTAILLIFVVPQFQDLFKGFGADLPAFTQMVIGLSEFMQAYWWAIFGALGIAGYAF
VQAKKRSRKFNHALDRLVLKLPIVGAIMTKAAIARYARTLSTMFAAGVPLVEALESVSGATGNSVYMEGVLRMRDNVATG
QQLQLAMQQTGLFPNMVVQMVAIGEESGSLDSMLGKVADFYEQEVDDAVDGLSSLLEPLIMAVLGVLVGGLVIAMYLPIF
KMGSVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=850230 QVG61_RS10545 WP_289930598.1 2287300..2288520(+) (pilC) [Thiohalobacter sp. IOR34]
ATGGCGGAAAAGGCACTGAAACAGGGTTTGTTCGCCTGGGAGGGCACCGACAAGCGCGGCAACCGCGTCAAGGGCGAGAG
CCGTGCCGCCAGCCAGGCGATGATCAAGGCCGATCTGCGGCGCCAGGGCATCACCCCCATCAAGGTGCGCAAGAAGTCCG
CCCTCGCCTCGGCCTCCAAGAAGAAGAAGATCCTGCCCAAGGACATCGCCATCTTCACCCGCCAGCTCGCCACCATGATG
TCCGCCGGCGTGCCCCTGGTGCAGGCCTTCGAGATCATCGGCAAGGGCCACGAGAACCCGGCCATGCAGGATCTGGTGCT
GACCATCAAGAACGACGTCGAGGCCGGCAACAACCTGCGCGACGCCCTGGCCAAGCACCCGCTGTATTTCGACGAGCTGG
TCTGCAACCTGGTCGAGGCCGGCGAGGCGGCCGGCGTGCTCGACACCCTGCTGGACAAGATCGCCACCTACAAGGAGAAG
ACCGAGGCGCTGAAGAGCAAGATCAAGAAGGCGCTGTTCTACCCCACTGCGGTCATGGTGGTGGCCTTCATCGTCACCGC
CATCCTGCTGATCTTCGTCGTCCCCCAGTTCCAGGACCTGTTCAAAGGCTTCGGCGCCGACCTGCCCGCCTTCACCCAGA
TGGTCATCGGCCTGTCGGAATTCATGCAGGCCTACTGGTGGGCGATCTTCGGCGCCCTCGGCATCGCCGGCTATGCCTTC
GTCCAGGCCAAGAAACGCTCGCGCAAGTTCAACCATGCCCTGGACCGGCTGGTGCTCAAGCTGCCGATCGTCGGCGCGAT
CATGACCAAGGCCGCCATCGCCCGCTATGCCCGCACCCTGTCGACCATGTTCGCCGCCGGCGTGCCCCTGGTGGAAGCCC
TGGAATCGGTATCCGGCGCGACCGGCAACAGCGTCTACATGGAGGGCGTGCTGCGCATGCGCGACAACGTGGCCACCGGC
CAGCAGTTGCAACTGGCCATGCAGCAGACCGGCCTGTTCCCCAACATGGTGGTGCAGATGGTCGCCATTGGCGAGGAGTC
CGGCTCGCTGGACAGCATGCTGGGCAAGGTCGCCGATTTCTATGAACAGGAGGTGGACGACGCCGTGGACGGCCTGTCCA
GCCTGCTGGAACCGCTGATCATGGCCGTGCTCGGCGTGCTGGTCGGCGGCCTGGTCATCGCCATGTACCTGCCCATCTTC
AAGATGGGTTCGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

62.315

100

0.623
  pilC Legionella pneumophila strain ERS1305867

62.626

97.537

0.611
  pilC Acinetobacter baylyi ADP1

59.606

100

0.596
  pilC Acinetobacter baumannii D1279779

60.705

97.783

0.594
  pilG Neisseria meningitidis 44/76-A

46.65

99.261

0.463
  pilG Neisseria gonorrhoeae MS11

46.402

99.261

0.461
  pilC Vibrio cholerae strain A1552

43.467

98.03

0.426
  pilC Vibrio campbellii strain DS40M4

41.855

98.276

0.411
  pilC Thermus thermophilus HB27

36.957

100

0.377