Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   QVG61_RS10530 Genome accession   NZ_CP128988
Coordinates   2283088..2284452 (+) Length   454 a.a.
NCBI ID   WP_289930595.1    Uniprot ID   -
Organism   Thiohalobacter sp. IOR34     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2278088..2289452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVG61_RS10510 (QVG61_10510) sucD 2278936..2279805 (-) 870 WP_289930591.1 succinate--CoA ligase subunit alpha -
  QVG61_RS10515 (QVG61_10515) sucC 2279889..2281052 (-) 1164 WP_289930592.1 ADP-forming succinate--CoA ligase subunit beta -
  QVG61_RS10520 (QVG61_10520) - 2281186..2281419 (+) 234 WP_289930593.1 PP0621 family protein -
  QVG61_RS10525 (QVG61_10525) - 2281427..2283091 (+) 1665 WP_289930594.1 ATP-binding protein -
  QVG61_RS10530 (QVG61_10530) pilR 2283088..2284452 (+) 1365 WP_289930595.1 sigma-54 dependent transcriptional regulator Regulator
  QVG61_RS10535 (QVG61_10535) pilA 2284872..2285303 (+) 432 WP_289930596.1 pilin Machinery gene
  QVG61_RS10540 (QVG61_10540) pilB 2285578..2287293 (+) 1716 WP_289930597.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QVG61_RS10545 (QVG61_10545) pilC 2287300..2288520 (+) 1221 WP_289930598.1 type II secretion system F family protein Machinery gene
  QVG61_RS10550 (QVG61_10550) pilD 2288558..2289433 (+) 876 WP_289930599.1 A24 family peptidase Machinery gene

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49654.79 Da        Isoelectric Point: 6.3001

>NTDB_id=850227 QVG61_RS10530 WP_289930595.1 2283088..2284452(+) (pilR) [Thiohalobacter sp. IOR34]
MTGDKAETGGHRALVVDDEPDILELLEITLGRMSIETDTAADLATARERLAARHYDLCLTDMRLPDGSGIELVEHIQQQH
PELPVAVITAYGSMESAVQALKTGAFDFVSKPVDLQVLRKLVGTALKLSDTKDFPGRDRRSRNELIGDSPLMQRTRSLIA
KLARSQAPVYISGESGTGKELVARLIHRKGPRAEQPFIAVNCGAIPAELMESEFFGHRKGSFTGATSDKAGLFQAADGGT
LFLDEVAELPLHMQVKLLRAIQEKAVRPVGAQHEVPIDVRILSATHKNLARLVEEGAFRQDLYYRLNVIELKLPALRERP
EDIPQLADHLLRKLSRGHSDAPVLGTDALDALRSYGFPGNVRELENILERALTMCEGPTIQALDLALPGQGSGSGNGSSP
PAGEVPLEDYLEQVERQAILDALEKTRNNKTAAARLLGITFRALRYRLKKLGLD

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=850227 QVG61_RS10530 WP_289930595.1 2283088..2284452(+) (pilR) [Thiohalobacter sp. IOR34]
ATGACAGGGGACAAGGCAGAAACCGGCGGCCACCGCGCCCTGGTGGTCGACGACGAACCGGACATCCTCGAGCTGCTGGA
GATCACCCTCGGCCGGATGTCGATCGAAACCGACACCGCCGCGGACCTGGCCACCGCCCGCGAGCGGCTCGCCGCGCGCC
ACTACGACCTGTGCCTGACCGACATGCGCCTGCCGGACGGCAGCGGCATCGAACTGGTGGAACACATCCAGCAGCAACAC
CCGGAACTGCCGGTGGCCGTGATCACCGCCTACGGCAGCATGGAATCCGCGGTCCAGGCGCTCAAGACCGGGGCCTTCGA
CTTCGTCTCCAAACCCGTCGACCTGCAGGTGCTGCGCAAGCTGGTCGGCACCGCCCTCAAGCTCTCGGACACCAAGGACT
TCCCCGGCCGCGACCGGCGCTCGCGCAACGAACTGATTGGCGACTCGCCATTGATGCAGCGCACCCGCTCGCTGATTGCC
AAGCTGGCCCGCAGCCAGGCGCCGGTCTACATCAGCGGTGAATCCGGCACCGGCAAGGAACTGGTGGCGCGGCTGATCCA
CCGCAAGGGACCACGCGCCGAACAGCCCTTCATCGCCGTCAACTGCGGCGCCATCCCCGCGGAGCTGATGGAGAGCGAGT
TCTTCGGCCACCGCAAGGGCAGCTTCACCGGCGCGACCAGCGACAAGGCCGGCCTGTTCCAGGCCGCCGATGGCGGCACC
CTGTTCCTGGACGAGGTCGCCGAGCTGCCGCTGCACATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGGCCGTGCG
GCCGGTCGGCGCCCAGCACGAGGTGCCCATCGACGTGCGCATCCTTTCCGCCACCCACAAGAACCTCGCCCGGCTGGTCG
AGGAAGGCGCCTTCCGCCAGGACCTCTACTACCGGCTGAACGTCATCGAGCTGAAGCTGCCGGCACTGCGCGAACGACCC
GAGGACATCCCGCAACTCGCGGATCATCTGCTGCGCAAGCTGTCGCGCGGCCACAGCGACGCCCCCGTGCTCGGCACGGA
CGCCCTCGATGCACTGCGCAGCTACGGCTTTCCGGGCAACGTGCGCGAACTGGAGAACATCCTGGAACGCGCCCTGACCA
TGTGCGAGGGGCCGACCATCCAGGCCTTGGACCTGGCCCTGCCCGGCCAGGGCAGCGGTTCCGGGAACGGCAGCTCACCA
CCCGCCGGCGAGGTGCCGCTGGAGGACTACCTGGAACAGGTCGAACGCCAGGCCATCCTCGACGCCCTGGAAAAGACCCG
CAACAACAAGACCGCCGCCGCCCGCCTGCTCGGCATCACCTTCCGCGCCCTGCGCTACCGGCTGAAGAAACTGGGGCTGG
ACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(145-311)

Bacterial regulatory protein, Fis family (HTH_8)

(411-451)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

64.35

98.238

0.632
  pilR Acinetobacter baumannii strain A118

50.433

100

0.513
  luxO Vibrio cholerae strain A1552

38.341

98.238

0.377