Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QVG61_RS10550 Genome accession   NZ_CP128988
Coordinates   2288558..2289433 (+) Length   291 a.a.
NCBI ID   WP_289930599.1    Uniprot ID   -
Organism   Thiohalobacter sp. IOR34     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2283558..2294433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVG61_RS10535 (QVG61_10535) pilA 2284872..2285303 (+) 432 WP_289930596.1 pilin Machinery gene
  QVG61_RS10540 (QVG61_10540) pilB 2285578..2287293 (+) 1716 WP_289930597.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QVG61_RS10545 (QVG61_10545) pilC 2287300..2288520 (+) 1221 WP_289930598.1 type II secretion system F family protein Machinery gene
  QVG61_RS10550 (QVG61_10550) pilD 2288558..2289433 (+) 876 WP_289930599.1 A24 family peptidase Machinery gene
  QVG61_RS10555 (QVG61_10555) coaE 2289470..2290087 (+) 618 WP_289930600.1 dephospho-CoA kinase -
  QVG61_RS10560 (QVG61_10560) zapD 2290574..2291344 (+) 771 WP_289930601.1 cell division protein ZapD -
  QVG61_RS10565 (QVG61_10565) yacG 2291702..2291899 (+) 198 WP_289930602.1 DNA gyrase inhibitor YacG -
  QVG61_RS10570 (QVG61_10570) - 2291998..2292726 (-) 729 WP_289930603.1 DUF72 domain-containing protein -
  QVG61_RS10575 (QVG61_10575) - 2292736..2293206 (-) 471 WP_289930604.1 hypothetical protein -
  QVG61_RS10580 (QVG61_10580) - 2293211..2294155 (-) 945 WP_289930605.1 Nudix family hydrolase -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 31856.64 Da        Isoelectric Point: 7.1250

>NTDB_id=850231 QVG61_RS10550 WP_289930599.1 2288558..2289433(+) (pilD) [Thiohalobacter sp. IOR34]
MDLVHLLQTQSTWLTGATALLGLLVGSFLNVVAHRLPLMMEREWKAQCRELLGTEDDTDGEAPLDLLRPASRCPHCGHRI
GALENIPLLSYLYLRGRCSGCGTRIALRYPLVELVSALLSGLLAWHFGWGWPLAAALVFTWTLIPLSLIDFDHQLLPDSL
TQPLLWLGLLLSLQGVFVDAHSAILGAAAGYLSLWAVYHLFRLLTGKEGMGYGDFKLLAACGAWMGWKLLPVIILLSSVV
GAVVGIGLILIRGRDRNIPIPFGPYIAAAGWLALLWGQDLTDAYLRFAGLR

Nucleotide


Download         Length: 876 bp        

>NTDB_id=850231 QVG61_RS10550 WP_289930599.1 2288558..2289433(+) (pilD) [Thiohalobacter sp. IOR34]
ATGGATCTCGTCCACCTGCTGCAGACCCAAAGCACCTGGCTGACCGGTGCCACCGCCCTGCTCGGGCTGCTGGTCGGCAG
CTTCCTGAACGTGGTTGCCCACCGCCTGCCGCTGATGATGGAACGCGAGTGGAAGGCGCAGTGCCGGGAACTGCTCGGCA
CAGAAGACGACACGGACGGCGAGGCCCCGCTCGACCTGCTGCGACCCGCCTCCCGCTGCCCGCACTGCGGTCACCGCATC
GGTGCCCTGGAAAACATCCCCCTGCTCAGTTATCTCTATCTGCGCGGCCGCTGCAGCGGCTGCGGAACGCGCATCGCCCT
GCGCTATCCGCTGGTGGAGCTGGTCAGTGCCCTGCTCTCCGGCCTGCTCGCCTGGCACTTCGGCTGGGGCTGGCCGCTGG
CGGCCGCCCTGGTCTTCACCTGGACCCTGATCCCGCTCAGCCTGATCGACTTCGATCACCAACTGCTGCCGGACAGCCTG
ACCCAGCCGCTGCTCTGGCTGGGTCTGCTGCTCAGCCTGCAAGGCGTCTTCGTCGACGCCCACAGCGCCATCCTCGGTGC
CGCCGCCGGCTATCTCAGCCTGTGGGCGGTGTATCATCTGTTCCGGCTGCTCACCGGCAAGGAGGGGATGGGGTATGGCG
ACTTCAAGCTGCTCGCCGCCTGCGGCGCCTGGATGGGCTGGAAGCTGCTGCCCGTCATCATCCTGCTCTCCTCCGTGGTC
GGCGCCGTGGTCGGCATCGGCCTGATCCTGATCCGCGGCCGGGACCGCAACATCCCCATCCCCTTCGGCCCCTACATCGC
CGCAGCCGGCTGGCTGGCCCTGCTCTGGGGCCAGGACCTGACCGACGCCTACCTGCGCTTCGCCGGCCTGCGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(137-246)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

55.926

92.784

0.519
  pilD Acinetobacter nosocomialis M2

49.296

97.595

0.481
  pilD Acinetobacter baumannii D1279779

48.944

97.595

0.478
  pilD Vibrio campbellii strain DS40M4

50

92.096

0.46
  pilD Neisseria gonorrhoeae MS11

50.394

87.285

0.44