Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OSR38_RS02420 Genome accession   NZ_CP112971
Coordinates   452041..452484 (-) Length   147 a.a.
NCBI ID   WP_267185364.1    Uniprot ID   -
Organism   Rickettsia conorii subsp. heilongjiangensis strain B8     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 447041..457484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSR38_RS07280 - 447352..447546 (+) 195 Protein_469 hypothetical protein -
  OSR38_RS02395 (OSR38_02395) - 447589..447717 (+) 129 WP_014014144.1 hypothetical protein -
  OSR38_RS02400 (OSR38_02400) gltX 447904..449247 (-) 1344 WP_014120685.1 glutamate--tRNA ligase -
  OSR38_RS02405 (OSR38_02405) topA 449356..451686 (-) 2331 WP_267185363.1 type I DNA topoisomerase -
  OSR38_RS02410 (OSR38_02410) - 451687..451815 (-) 129 WP_197535033.1 hypothetical protein -
  OSR38_RS02415 (OSR38_02415) - 451882..452028 (-) 147 WP_197701943.1 hypothetical protein -
  OSR38_RS02420 (OSR38_02420) dprA 452041..452484 (-) 444 WP_267185364.1 DNA-processing protein DprA Machinery gene
  OSR38_RS07285 - 452615..452761 (-) 147 WP_323811185.1 hypothetical protein -
  OSR38_RS02430 (OSR38_02430) - 453089..453691 (-) 603 WP_024704503.1 peroxiredoxin -
  OSR38_RS02435 (OSR38_02435) - 453773..454708 (-) 936 WP_014014149.1 SPFH domain-containing protein -
  OSR38_RS02440 (OSR38_02440) - 454781..455011 (-) 231 WP_014120688.1 hypothetical protein -
  OSR38_RS02445 (OSR38_02445) - 455078..456646 (-) 1569 WP_045805445.1 phosphoethanolamine transferase -
  OSR38_RS02450 (OSR38_02450) ruvX 456682..457146 (+) 465 WP_267185366.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 15927.35 Da        Isoelectric Point: 7.9319

>NTDB_id=758863 OSR38_RS02420 WP_267185364.1 452041..452484(-) (dprA) [Rickettsia conorii subsp. heilongjiangensis strain B8]
MRCNSRHKNAAANGRSFAHKIANDLVKEGYITVSGLARGIDSSVHQAAISQTIEVIVGGIDHIYPPENKKLFENLAEEGL
ILAELPIGFTPLGKHFPQRNRIISGLALGVVVVEASLKSDSLITAKFALEQNREIFAVPGFPLDPRC

Nucleotide


Download         Length: 444 bp        

>NTDB_id=758863 OSR38_RS02420 WP_267185364.1 452041..452484(-) (dprA) [Rickettsia conorii subsp. heilongjiangensis strain B8]
ATGCGTTGCAATAGTAGGCACAAAAACGCTGCTGCAAACGGAAGAAGCTTTGCGCATAAAATTGCAAATGATTTAGTAAA
AGAAGGTTATATAACCGTTTCAGGGTTAGCACGAGGAATAGATAGCAGCGTACATCAAGCTGCAATTTCCCAAACTATCG
AAGTTATTGTAGGCGGTATTGATCATATATATCCACCGGAAAATAAAAAACTGTTTGAAAATTTAGCAGAAGAAGGTTTA
ATATTAGCTGAGTTACCTATCGGCTTTACCCCGCTTGGAAAACATTTCCCACAGCGTAACAGGATAATATCGGGACTAGC
CTTAGGAGTAGTGGTAGTAGAAGCAAGCTTAAAATCCGATTCATTAATAACTGCAAAATTTGCACTTGAACAAAATAGGG
AAATATTTGCCGTTCCTGGCTTTCCTTTAGATCCAAGATGTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae MS11

46.753

100

0.49
  dprA Neisseria gonorrhoeae strain FA1090

46.104

100

0.483
  dprA Bacillus subtilis subsp. subtilis str. 168

48.227

95.918

0.463
  dprA Acinetobacter baumannii strain A118

50

92.517

0.463
  dprA Acinetobacter baumannii D1279779

50

92.517

0.463
  dprA Lactococcus lactis subsp. cremoris KW2

50.746

91.156

0.463
  dprA Neisseria meningitidis MC58

47.482

94.558

0.449
  dprA Neisseria meningitidis strain C311

47.482

94.558

0.449
  dprA Legionella pneumophila strain ERS1305867

47.059

92.517

0.435
  dprA Streptococcus mutans UA159

45.714

95.238

0.435
  dprA Vibrio cholerae strain A1552

46.324

92.517

0.429
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.568

100

0.429
  dprA Thermus thermophilus HB27

44.056

97.279

0.429
  dprA/cilB/dalA Streptococcus mitis SK321

44.286

95.238

0.422
  dprA Vibrio campbellii strain DS40M4

45.926

91.837

0.422
  dprA Haemophilus influenzae Rd KW20

47.328

89.116

0.422
  dprA Glaesserella parasuis strain SC1401

42.958

96.599

0.415
  dprA Acinetobacter baylyi ADP1

44.853

92.517

0.415
  dprA Staphylococcus aureus MW2

41.549

96.599

0.401
  dprA Staphylococcus aureus N315

41.549

96.599

0.401
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

48.718

79.592

0.388
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

48.718

79.592

0.388
  dprA/cilB/dalA Streptococcus pneumoniae D39

48.718

79.592

0.388
  dprA/cilB/dalA Streptococcus pneumoniae R6

48.718

79.592

0.388
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

48.718

79.592

0.388