Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NIN90_RS04840 Genome accession   NZ_CP100422
Coordinates   1044479..1044712 (+) Length   77 a.a.
NCBI ID   WP_231623425.1    Uniprot ID   -
Organism   Vibrio furnissii strain 104486766     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1039479..1049712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIN90_RS04830 - 1041992..1042264 (+) 273 WP_004726502.1 HU family DNA-binding protein -
  NIN90_RS04835 ppiD 1042418..1044277 (+) 1860 WP_232658584.1 peptidylprolyl isomerase -
  NIN90_RS04840 comEA 1044479..1044712 (+) 234 WP_231623425.1 ComEA family DNA-binding protein Machinery gene
  NIN90_RS04845 cmk 1044894..1045574 (+) 681 WP_038151335.1 (d)CMP kinase -
  NIN90_RS04850 rpsA 1045679..1047349 (+) 1671 WP_004726493.1 30S ribosomal protein S1 -
  NIN90_RS04855 ihfB 1047580..1047864 (+) 285 WP_004726491.1 integration host factor subunit beta -
  NIN90_RS04860 - 1048003..1048287 (+) 285 WP_004726490.1 LapA family protein -
  NIN90_RS04865 lapB 1048300..1049469 (+) 1170 WP_004726488.1 lipopolysaccharide assembly protein LapB -

Sequence

Protein


Download         Length: 77 a.a.        Molecular weight: 8209.36 Da        Isoelectric Point: 4.4815

>NTDB_id=705070 NIN90_RS04840 WP_231623425.1 1044479..1044712(+) (comEA) [Vibrio furnissii strain 104486766]
MAADSAQVSDEIEITVNINTAPAEELATLLKGIGLKKAQAIVEYREANGAFQSKQELTQVKGIGPSIVAKNDDRILL

Nucleotide


Download         Length: 234 bp        

>NTDB_id=705070 NIN90_RS04840 WP_231623425.1 1044479..1044712(+) (comEA) [Vibrio furnissii strain 104486766]
ATGGCCGCTGATAGCGCGCAGGTGAGTGATGAAATTGAAATCACGGTCAACATCAACACCGCCCCAGCCGAAGAGTTGGC
AACCTTACTCAAAGGCATTGGATTGAAAAAAGCACAGGCCATCGTCGAGTACCGTGAAGCGAATGGCGCTTTTCAATCCA
AACAGGAATTGACTCAGGTAAAAGGTATCGGCCCTTCGATAGTGGCCAAAAATGACGACCGCATTCTGTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(14-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

70.667

97.403

0.688
  comEA Vibrio cholerae strain A1552

70.667

97.403

0.688
  comEA Vibrio parahaemolyticus RIMD 2210633

61.538

100

0.623
  comEA Vibrio campbellii strain DS40M4

65.152

85.714

0.558
  comEA/comE1 Glaesserella parasuis strain SC1401

58.065

80.519

0.468
  comE1/comEA Haemophilus influenzae Rd KW20

50

93.506

0.468
  comEA Acinetobacter baylyi ADP1

54.839

80.519

0.442
  comEA Acinetobacter baumannii D1279779

53.226

80.519

0.429
  comE Neisseria gonorrhoeae MS11

55.932

76.623

0.429
  comE Neisseria gonorrhoeae MS11

55.932

76.623

0.429
  comE Neisseria gonorrhoeae MS11

55.932

76.623

0.429
  comE Neisseria gonorrhoeae MS11

55.932

76.623

0.429
  comEA Acinetobacter baumannii strain A118

51.613

80.519

0.416
  comEA Lactococcus lactis subsp. cremoris KW2

43.243

96.104

0.416
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.357

72.727

0.403
  comEA/celA/cilE Streptococcus mitis NCTC 12261

47.619

81.818

0.39
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

47.619

81.818

0.39
  comEA/celA/cilE Streptococcus pneumoniae Rx1

47.619

81.818

0.39
  comEA/celA/cilE Streptococcus pneumoniae D39

47.619

81.818

0.39
  comEA/celA/cilE Streptococcus pneumoniae R6

47.619

81.818

0.39
  comEA Legionella pneumophila str. Paris

46.667

77.922

0.364
  comEA/celA/cilE Streptococcus mitis SK321

46.667

77.922

0.364
  comEA Legionella pneumophila strain ERS1305867

46.667

77.922

0.364