Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   XVT_RS16295 Genome accession   NZ_CP084548
Coordinates   3782621..3783061 (-) Length   146 a.a.
NCBI ID   WP_033484417.1    Uniprot ID   -
Organism   Xanthomonas citri pv. viticola strain LMG 965     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3777621..3788061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XVT_RS16280 (XVT_16290) pilR 3778407..3779861 (+) 1455 WP_033484414.1 sigma-54 dependent transcriptional regulator Regulator
  XVT_RS16285 (XVT_16295) pilB 3780311..3782047 (-) 1737 WP_033484416.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XVT_RS16290 (XVT_16300) pilA 3782110..3782544 (-) 435 WP_033480656.1 pilin Machinery gene
  XVT_RS16295 (XVT_16305) pilE 3782621..3783061 (-) 441 WP_033484417.1 pilin Machinery gene
  XVT_RS16300 (XVT_16310) pilC 3783388..3784644 (+) 1257 WP_033484418.1 type II secretion system F family protein Machinery gene
  XVT_RS16305 (XVT_16315) - 3784651..3785514 (+) 864 WP_003491180.1 A24 family peptidase -
  XVT_RS16310 (XVT_16320) coaE 3785528..3786139 (+) 612 WP_033484420.1 dephospho-CoA kinase -
  XVT_RS16315 (XVT_16325) - 3786534..3786800 (+) 267 WP_154666337.1 hypothetical protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 14950.04 Da        Isoelectric Point: 9.0090

>NTDB_id=611843 XVT_RS16295 WP_033484417.1 3782621..3783061(-) (pilE) [Xanthomonas citri pv. viticola strain LMG 965]
MKKQNGFTLIELMIVVAIIAILAAIALPAYQDYLARSQVSEGLSLASGAKTAVAETYANTGAFPANNAAAGLETAANIKG
KYITSVTVSSGGVITALFNSSNAKLSGKNLVLTPTDNNGSISWGCSTGTTIDQKYLPTSCRTASTP

Nucleotide


Download         Length: 441 bp        

>NTDB_id=611843 XVT_RS16295 WP_033484417.1 3782621..3783061(-) (pilE) [Xanthomonas citri pv. viticola strain LMG 965]
ATGAAGAAGCAAAACGGTTTTACGTTGATCGAACTCATGATCGTGGTCGCGATCATTGCGATTCTGGCTGCCATTGCTCT
GCCGGCTTATCAGGACTACCTCGCGCGTTCGCAGGTCTCTGAAGGCCTGTCGCTGGCATCGGGTGCAAAGACCGCCGTTG
CTGAGACGTATGCCAACACTGGTGCATTTCCGGCCAACAACGCAGCTGCTGGTCTTGAGACTGCGGCAAACATCAAGGGT
AAGTACATCACCTCGGTGACCGTTAGCTCTGGTGGCGTCATCACTGCGCTGTTTAATAGCTCCAATGCGAAGCTGAGTGG
TAAGAACCTTGTCCTGACTCCGACGGACAACAACGGGTCGATCAGCTGGGGCTGCAGCACTGGCACCACCATCGATCAGA
AGTATCTGCCTACCTCTTGCCGTACTGCGTCTACCCCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

48.125

100

0.527
  pilE Neisseria gonorrhoeae strain FA1090

47.17

100

0.514
  pilA2 Legionella pneumophila str. Paris

50.714

95.89

0.486
  pilA2 Legionella pneumophila strain ERS1305867

50

95.89

0.479
  pilA/pilA1 Eikenella corrodens VA1

45.161

100

0.479
  comP Acinetobacter baylyi ADP1

46

100

0.473
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

35.87

100

0.452
  pilA Ralstonia pseudosolanacearum GMI1000

38.415

100

0.432
  pilA Acinetobacter baumannii strain A118

42.282

100

0.432
  pilA Vibrio cholerae strain A1552

38.816

100

0.404
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

38.816

100

0.404
  pilA Vibrio cholerae C6706

38.816

100

0.404
  pilA Pseudomonas aeruginosa PAK

38.816

100

0.404
  pilA Vibrio campbellii strain DS40M4

37.584

100

0.384
  pilA/pilAI Pseudomonas stutzeri DSM 10701

38.849

95.205

0.37