Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   XVT_RS16280 Genome accession   NZ_CP084548
Coordinates   3778407..3779861 (+) Length   484 a.a.
NCBI ID   WP_033484414.1    Uniprot ID   -
Organism   Xanthomonas citri pv. viticola strain LMG 965     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3773407..3784861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XVT_RS16255 (XVT_16265) - 3773443..3773814 (-) 372 WP_033484413.1 endonuclease domain-containing protein -
  XVT_RS16260 (XVT_16270) - 3773869..3774084 (-) 216 WP_033484451.1 hypothetical protein -
  XVT_RS16265 (XVT_16275) sucD 3774228..3775103 (-) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  XVT_RS16270 (XVT_16280) sucC 3775128..3776297 (-) 1170 WP_003488601.1 ADP-forming succinate--CoA ligase subunit beta -
  XVT_RS16275 (XVT_16285) - 3776529..3778142 (+) 1614 WP_005921369.1 HAMP domain-containing sensor histidine kinase -
  XVT_RS16280 (XVT_16290) pilR 3778407..3779861 (+) 1455 WP_033484414.1 sigma-54 dependent transcriptional regulator Regulator
  XVT_RS16285 (XVT_16295) pilB 3780311..3782047 (-) 1737 WP_033484416.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XVT_RS16290 (XVT_16300) pilA 3782110..3782544 (-) 435 WP_033480656.1 pilin Machinery gene
  XVT_RS16295 (XVT_16305) pilE 3782621..3783061 (-) 441 WP_033484417.1 pilin Machinery gene
  XVT_RS16300 (XVT_16310) pilC 3783388..3784644 (+) 1257 WP_033484418.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52510.40 Da        Isoelectric Point: 7.0128

>NTDB_id=611840 XVT_RS16280 WP_033484414.1 3778407..3779861(+) (pilR) [Xanthomonas citri pv. viticola strain LMG 965]
MGRHLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPLPPPEQASR
LLGDSSAMEILRATISKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASGESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAAPPGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=611840 XVT_RS16280 WP_033484414.1 3778407..3779861(+) (pilR) [Xanthomonas citri pv. viticola strain LMG 965]
TTGGGCCGCCACCTGCTCGACAATTGTCGACCATCGTCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCCTGCGCATCAGCACTG
CTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGTTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACTGCCGCCACCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCAGTGCCATGGAAATCCTGCGCGCCACCATCAGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGCACGTGCCGCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGAGGCACGCTGTTTCTGGACGAAGTGGCCGAATTGCCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGCATCCGGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCGCTGCTGACCCAATCCGCACTCGACGCCTTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCTACC
GACCTGCGCCTGCCCGCGCACGGCGGCCACCGGTTGGCCGCCCCCCCAGGAGGCGCCGCGGCCGAACCGCGCGAAGCCGT
CGTCGACATCGACCCCGCCTCGGCCGCGCTGCCGTCCTACATCGAGCAACTGGAACGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGCTGCGTTACAAGCTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(28-134)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.043

95.041

0.599
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471