Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | XVT_RS16300 | Genome accession | NZ_CP084548 |
| Coordinates | 3783388..3784644 (+) | Length | 418 a.a. |
| NCBI ID | WP_033484418.1 | Uniprot ID | A0AB73NL91 |
| Organism | Xanthomonas citri pv. viticola strain LMG 965 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3778388..3789644
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XVT_RS16280 (XVT_16290) | pilR | 3778407..3779861 (+) | 1455 | WP_033484414.1 | sigma-54 dependent transcriptional regulator | Regulator |
| XVT_RS16285 (XVT_16295) | pilB | 3780311..3782047 (-) | 1737 | WP_033484416.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| XVT_RS16290 (XVT_16300) | pilA | 3782110..3782544 (-) | 435 | WP_033480656.1 | pilin | Machinery gene |
| XVT_RS16295 (XVT_16305) | pilE | 3782621..3783061 (-) | 441 | WP_033484417.1 | pilin | Machinery gene |
| XVT_RS16300 (XVT_16310) | pilC | 3783388..3784644 (+) | 1257 | WP_033484418.1 | type II secretion system F family protein | Machinery gene |
| XVT_RS16305 (XVT_16315) | - | 3784651..3785514 (+) | 864 | WP_003491180.1 | A24 family peptidase | - |
| XVT_RS16310 (XVT_16320) | coaE | 3785528..3786139 (+) | 612 | WP_033484420.1 | dephospho-CoA kinase | - |
| XVT_RS16315 (XVT_16325) | - | 3786534..3786800 (+) | 267 | WP_154666337.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 418 a.a. Molecular weight: 45970.36 Da Isoelectric Point: 10.3003
>NTDB_id=611844 XVT_RS16300 WP_033484418.1 3783388..3784644(+) (pilC) [Xanthomonas citri pv. viticola strain LMG 965]
MSVARSSIKKQQVDRNVSEMIPFVWEGTDKRGVKMKGEQQARNANMLRAELRRQGITPTVVKTKPKPLFGAAGKKISPKD
IAFFSRQMATMMKSGVPIVGALEIIGEGHKNPRMKKMVGQIRADIEGGSSLYEAISRHPVQFDDLYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVMAVAIIVSGILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWF
MLLASVAAIAGFIFAYKRSPRMRHGMDRLVLKFPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGSVV
MSVARSSIKKQQVDRNVSEMIPFVWEGTDKRGVKMKGEQQARNANMLRAELRRQGITPTVVKTKPKPLFGAAGKKISPKD
IAFFSRQMATMMKSGVPIVGALEIIGEGHKNPRMKKMVGQIRADIEGGSSLYEAISRHPVQFDDLYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVMAVAIIVSGILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWF
MLLASVAAIAGFIFAYKRSPRMRHGMDRLVLKFPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGSVV
Nucleotide
Download Length: 1257 bp
>NTDB_id=611844 XVT_RS16300 WP_033484418.1 3783388..3784644(+) (pilC) [Xanthomonas citri pv. viticola strain LMG 965]
ATGTCAGTCGCTCGCAGCAGCATCAAGAAGCAACAGGTGGATAGAAATGTCAGTGAAATGATCCCGTTTGTCTGGGAAGG
CACAGACAAGCGTGGAGTCAAGATGAAGGGGGAGCAGCAGGCCCGCAATGCAAACATGCTGCGTGCAGAGCTTCGTCGCC
AGGGAATCACCCCTACAGTTGTAAAGACTAAACCAAAACCGCTTTTTGGCGCTGCGGGCAAAAAGATATCGCCAAAGGAC
ATCGCATTCTTCAGCCGTCAGATGGCAACGATGATGAAGTCTGGAGTTCCCATAGTTGGCGCACTTGAAATTATCGGCGA
GGGGCACAAGAACCCTCGCATGAAAAAGATGGTTGGTCAGATTCGAGCTGATATCGAAGGAGGCTCTTCACTTTACGAAG
CTATTTCTCGACACCCAGTCCAGTTCGACGACTTGTATCGAAATCTGGTGCGCGCGGGCGAAGGCGCTGGCGTCTTGGAA
ACCGTCCTAGATACAGTTGCGAATTATAAAGAAAATATTGAGGCCCTTAAGGGAAAAATCAAAAAAGCCCTATTTTATCC
TGCCATGGTAATGGCAGTCGCAATCATTGTGAGCGGTATACTATTAGTCTTCGTAGTCCCTCAATTTGAAGATGTATTTA
AAGGTTTTGGAGCAGAACTTCCCGCTTTTACGCAAATGATTGTAGCAGCATCTCGTTTTATGGTGTCTTATTGGTGGTTC
ATGCTACTAGCAAGTGTCGCAGCGATAGCTGGCTTCATCTTTGCCTACAAACGCTCGCCGCGCATGCGCCATGGAATGGA
CAGGCTTGTTTTGAAGTTTCCAGTGATTGGGCAGATTATGCACAACAGCTCGATTGCTCGATTTGCCCGAACTACGGCGG
TCACGTTTAAAGCTGGCGTACCCCTTGTAGAAGCTCTAAGTATTGTTGCCGGCGCAACTGGCAACAAGGTATATGAGGAA
GCTGTGCTGCGGATGCGCGACGACGTCTCTGTAGGATACCCCGTGAACATGGCTATGAAGCAAGTAAACCTGTTCCCACA
TATGGTGATTCAAATGACATCCATTGGCGAGGAAGCGGGCGCACTTGATGCAATGCTATTCAAAGTCGCGGAGTATTTCG
AGCAGGAAGTCAATAATGCCGTAGACGCGCTAAGCAGCCTGTTGGAGCCGTTGATCATGGTATTCATCGGTACAATTGTT
GGCGGCATGGTGATCGGCATGTATCTTCCGATTTTCAAACTTGGCTCGGTGGTATAA
ATGTCAGTCGCTCGCAGCAGCATCAAGAAGCAACAGGTGGATAGAAATGTCAGTGAAATGATCCCGTTTGTCTGGGAAGG
CACAGACAAGCGTGGAGTCAAGATGAAGGGGGAGCAGCAGGCCCGCAATGCAAACATGCTGCGTGCAGAGCTTCGTCGCC
AGGGAATCACCCCTACAGTTGTAAAGACTAAACCAAAACCGCTTTTTGGCGCTGCGGGCAAAAAGATATCGCCAAAGGAC
ATCGCATTCTTCAGCCGTCAGATGGCAACGATGATGAAGTCTGGAGTTCCCATAGTTGGCGCACTTGAAATTATCGGCGA
GGGGCACAAGAACCCTCGCATGAAAAAGATGGTTGGTCAGATTCGAGCTGATATCGAAGGAGGCTCTTCACTTTACGAAG
CTATTTCTCGACACCCAGTCCAGTTCGACGACTTGTATCGAAATCTGGTGCGCGCGGGCGAAGGCGCTGGCGTCTTGGAA
ACCGTCCTAGATACAGTTGCGAATTATAAAGAAAATATTGAGGCCCTTAAGGGAAAAATCAAAAAAGCCCTATTTTATCC
TGCCATGGTAATGGCAGTCGCAATCATTGTGAGCGGTATACTATTAGTCTTCGTAGTCCCTCAATTTGAAGATGTATTTA
AAGGTTTTGGAGCAGAACTTCCCGCTTTTACGCAAATGATTGTAGCAGCATCTCGTTTTATGGTGTCTTATTGGTGGTTC
ATGCTACTAGCAAGTGTCGCAGCGATAGCTGGCTTCATCTTTGCCTACAAACGCTCGCCGCGCATGCGCCATGGAATGGA
CAGGCTTGTTTTGAAGTTTCCAGTGATTGGGCAGATTATGCACAACAGCTCGATTGCTCGATTTGCCCGAACTACGGCGG
TCACGTTTAAAGCTGGCGTACCCCTTGTAGAAGCTCTAAGTATTGTTGCCGGCGCAACTGGCAACAAGGTATATGAGGAA
GCTGTGCTGCGGATGCGCGACGACGTCTCTGTAGGATACCCCGTGAACATGGCTATGAAGCAAGTAAACCTGTTCCCACA
TATGGTGATTCAAATGACATCCATTGGCGAGGAAGCGGGCGCACTTGATGCAATGCTATTCAAAGTCGCGGAGTATTTCG
AGCAGGAAGTCAATAATGCCGTAGACGCGCTAAGCAGCCTGTTGGAGCCGTTGATCATGGTATTCATCGGTACAATTGTT
GGCGGCATGGTGATCGGCATGTATCTTCCGATTTTCAAACTTGGCTCGGTGGTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Acinetobacter baylyi ADP1 |
53.102 |
96.411 |
0.512 |
| pilC | Pseudomonas stutzeri DSM 10701 |
53.283 |
94.737 |
0.505 |
| pilC | Acinetobacter baumannii D1279779 |
52.109 |
96.411 |
0.502 |
| pilC | Legionella pneumophila strain ERS1305867 |
51.478 |
97.129 |
0.5 |
| pilG | Neisseria gonorrhoeae MS11 |
45.5 |
95.694 |
0.435 |
| pilG | Neisseria meningitidis 44/76-A |
45 |
95.694 |
0.431 |
| pilC | Vibrio cholerae strain A1552 |
42.677 |
94.737 |
0.404 |
| pilC | Vibrio campbellii strain DS40M4 |
39.646 |
94.737 |
0.376 |
| pilC | Thermus thermophilus HB27 |
37.94 |
95.215 |
0.361 |