Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   XVT_RS16290 Genome accession   NZ_CP084548
Coordinates   3782110..3782544 (-) Length   144 a.a.
NCBI ID   WP_033480656.1    Uniprot ID   -
Organism   Xanthomonas citri pv. viticola strain LMG 965     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3777110..3787544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XVT_RS16280 (XVT_16290) pilR 3778407..3779861 (+) 1455 WP_033484414.1 sigma-54 dependent transcriptional regulator Regulator
  XVT_RS16285 (XVT_16295) pilB 3780311..3782047 (-) 1737 WP_033484416.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XVT_RS16290 (XVT_16300) pilA 3782110..3782544 (-) 435 WP_033480656.1 pilin Machinery gene
  XVT_RS16295 (XVT_16305) pilE 3782621..3783061 (-) 441 WP_033484417.1 pilin Machinery gene
  XVT_RS16300 (XVT_16310) pilC 3783388..3784644 (+) 1257 WP_033484418.1 type II secretion system F family protein Machinery gene
  XVT_RS16305 (XVT_16315) - 3784651..3785514 (+) 864 WP_003491180.1 A24 family peptidase -
  XVT_RS16310 (XVT_16320) coaE 3785528..3786139 (+) 612 WP_033484420.1 dephospho-CoA kinase -
  XVT_RS16315 (XVT_16325) - 3786534..3786800 (+) 267 WP_154666337.1 hypothetical protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 14954.22 Da        Isoelectric Point: 7.8193

>NTDB_id=611842 XVT_RS16290 WP_033480656.1 3782110..3782544(-) (pilA) [Xanthomonas citri pv. viticola strain LMG 965]
MKVRGFTLIELMIVVAIIAILAAIALPAYQDYLVRAQVAEGLSLASGAKVAVEEFHWAQSVSPTSNAQAGLGSADSIKGR
YVSSVTVGADGIITVAFATLGANESIRGSQLQLVPDWSGAGSTVWRCDGAGTTLQAKYLPKACR

Nucleotide


Download         Length: 435 bp        

>NTDB_id=611842 XVT_RS16290 WP_033480656.1 3782110..3782544(-) (pilA) [Xanthomonas citri pv. viticola strain LMG 965]
GTGAAAGTGCGCGGATTCACTTTGATTGAGTTGATGATTGTAGTTGCGATCATTGCAATTCTCGCTGCAATTGCATTGCC
CGCGTATCAGGATTACCTGGTGAGAGCCCAAGTGGCGGAAGGGTTAAGTCTTGCCTCAGGTGCCAAGGTGGCAGTGGAGG
AGTTCCACTGGGCCCAAAGCGTCTCTCCGACATCAAACGCTCAGGCTGGATTGGGTAGCGCTGATAGCATAAAAGGTCGA
TATGTTTCGTCCGTTACCGTTGGTGCGGATGGCATCATAACTGTCGCGTTCGCTACTTTAGGCGCGAACGAATCTATTCG
AGGGTCGCAGTTGCAGTTGGTACCTGACTGGTCTGGCGCAGGCTCGACGGTGTGGCGATGCGATGGAGCCGGCACGACCC
TTCAGGCAAAATATCTACCTAAAGCTTGCAGATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-26)

Pilin (bacterial filament) (Pilin)

(34-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

41.42

100

0.486
  pilE Neisseria gonorrhoeae strain FA1090

43.949

100

0.479
  pilE Neisseria gonorrhoeae MS11

42.405

100

0.465
  pilA2 Legionella pneumophila str. Paris

45.139

100

0.451
  pilA2 Legionella pneumophila strain ERS1305867

45.139

100

0.451
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

35.519

100

0.451
  comP Acinetobacter baylyi ADP1

40.667

100

0.424
  pilA/pilA1 Eikenella corrodens VA1

39.073

100

0.41
  pilA/pilAI Pseudomonas stutzeri DSM 10701

40.845

98.611

0.403
  pilA Acinetobacter baumannii strain A118

37.589

97.917

0.368