Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   XVT_RS16285 Genome accession   NZ_CP084548
Coordinates   3780311..3782047 (-) Length   578 a.a.
NCBI ID   WP_033484416.1    Uniprot ID   -
Organism   Xanthomonas citri pv. viticola strain LMG 965     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3775311..3787047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XVT_RS16275 (XVT_16285) - 3776529..3778142 (+) 1614 WP_005921369.1 HAMP domain-containing sensor histidine kinase -
  XVT_RS16280 (XVT_16290) pilR 3778407..3779861 (+) 1455 WP_033484414.1 sigma-54 dependent transcriptional regulator Regulator
  XVT_RS16285 (XVT_16295) pilB 3780311..3782047 (-) 1737 WP_033484416.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XVT_RS16290 (XVT_16300) pilA 3782110..3782544 (-) 435 WP_033480656.1 pilin Machinery gene
  XVT_RS16295 (XVT_16305) pilE 3782621..3783061 (-) 441 WP_033484417.1 pilin Machinery gene
  XVT_RS16300 (XVT_16310) pilC 3783388..3784644 (+) 1257 WP_033484418.1 type II secretion system F family protein Machinery gene
  XVT_RS16305 (XVT_16315) - 3784651..3785514 (+) 864 WP_003491180.1 A24 family peptidase -
  XVT_RS16310 (XVT_16320) coaE 3785528..3786139 (+) 612 WP_033484420.1 dephospho-CoA kinase -
  XVT_RS16315 (XVT_16325) - 3786534..3786800 (+) 267 WP_154666337.1 hypothetical protein -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 62604.71 Da        Isoelectric Point: 5.6006

>NTDB_id=611841 XVT_RS16285 WP_033484416.1 3780311..3782047(-) (pilB) [Xanthomonas citri pv. viticola strain LMG 965]
MSVLSTANLVGITGIARRLVQDGALEESAARSAMDQAALAKVPLPQWFSEKKLVAASQLAAASAVEFGMPLLDVSAFDAN
QNAVKLVSEELLQKHQVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEAILVDEDQIRRTLEQWQASNASLGSSLG
NDDEEMGDLDVSAGDEDMGAGGDSGVDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKAP
VKLNQRIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIDKLGYEPDQQK
LFLEAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDP
DIIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRKSTLP
DNALLAEGFTPAQLAAGIELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQAIGIRDLRQSALM
KAAHGVTSLAEINRVTKD

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=611841 XVT_RS16285 WP_033484416.1 3780311..3782047(-) (pilB) [Xanthomonas citri pv. viticola strain LMG 965]
ATGAGCGTTTTATCGACCGCAAATCTAGTTGGAATCACCGGAATTGCTCGTAGGCTGGTGCAGGATGGCGCATTGGAGGA
AAGCGCGGCTCGAAGCGCGATGGATCAGGCTGCTCTAGCGAAAGTTCCACTGCCGCAGTGGTTCTCGGAGAAAAAGCTCG
TCGCTGCCTCGCAGTTGGCGGCCGCTAGTGCAGTCGAGTTCGGCATGCCACTACTGGACGTATCGGCATTCGACGCCAAC
CAGAACGCAGTCAAGCTGGTCAGTGAGGAGTTGCTCCAGAAGCACCAGGTGCTGCCGCTGTTCAAGCGCGGCAACCGGTT
GTTCGTGGGGGTGAGCAACCCGACCCAGACCCGAGCGCTGGACGACATCAAGTTCCATACGAACTTGGTGGTCGAGGCCA
TTCTTGTCGACGAGGATCAGATCCGCCGGACGCTCGAACAGTGGCAGGCCAGCAACGCGTCCTTGGGTTCGTCGCTTGGC
AACGACGACGAGGAAATGGGGGATCTGGACGTCTCGGCCGGCGACGAGGACATGGGCGCCGGCGGGGATTCCGGGGTCGA
TGCCAAGGGCGACGACACGCCGGTGGTGAAGTTCGTCAACAAGGTGCTGGTGGATGCGATCAGGCGGGGAGCCTCGGACA
TCCATTTCGAGCCGTATGAAGACGACTACCGGGTGCGCTTGCGCATCGATGGCCTGTTGAAGAACGTGGCCAAGGCGCCG
GTGAAGCTGAACCAGCGCATCGCAGCGCGGTTGAAGGTGATGTCGCAGCTGGATATCGCCGAGAAGCGGGTGCCGCAGGA
CGGGCGCATCAAGCTCAACCTGTCCAAGACCAAGCAGATCGACTTCCGTGTCAGCACCTTGCCGACCCTGTTCGGCGAGA
AGGTGGTGCTGCGTATCCTGGACGGCAGCGCGGCCAAGCTGGGCATCGACAAGCTGGGCTACGAGCCGGACCAACAGAAG
CTGTTCCTGGAAGCGATCCACAAGCCCTATGGCATGGTGCTGGTGACCGGGCCGACCGGCTCGGGCAAGACGGTGTCGTT
GTACACCGCGCTGGGAATTCTCAACGACGAGACGCGCAATATCTCCACCGCGGAGGATCCGGTCGAAATCCGCTTGCCTG
GCGTCAATCAGGTGCAGCAGAACAACAAGCGTGGCATGACCTTCGCCGCGGCTTTGCGCTCGTTCCTGCGACAGGATCCG
GACATCATCATGGTCGGCGAAATCCGTGACCTGGAGACGGCCGAGATTGCGATCAAGGCGGCGCAGACGGGTCACATGGT
GCTGTCGACGTTGCACACCAACGATGCGCCGCAGACCATCGCACGTCTGATGAACATGGGCATCGCGCCCTACAACATCA
CCTCGTCGGTGACGCTGGTGATCGCGCAGCGTCTGGCGCGGCGCTTGTGCAACAACTGCAAGCGCAAGTCGACGCTGCCT
GACAACGCATTGCTGGCCGAAGGGTTCACGCCTGCACAGCTTGCCGCCGGGATCGAGCTGTATGAGGCGGTCGGTTGCGA
TGAGTGCACCGAAGGTTACAAGGGGCGTACCGGTATCTACCAGGTAATGCCGATGACCGACGAGATCGGAGCGATCGTGC
TGGAAGGCGGCAATGCGATGCAGATCGCCGAGGCCGCGCAGGCGATCGGTATCCGCGATTTGCGGCAGTCGGCGTTGATG
AAGGCTGCGCACGGGGTGACCAGCCTGGCGGAGATCAATCGTGTGACGAAGGACTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(201-468)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(50-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

55.786

100

0.559
  pilB Acinetobacter baylyi ADP1

54.922

100

0.55
  pilB Legionella pneumophila strain ERS1305867

52.548

98.443

0.517
  pilB Vibrio cholerae strain A1552

49.047

99.827

0.49
  pilF Neisseria gonorrhoeae MS11

49.648

98.27

0.488
  pilB Vibrio parahaemolyticus RIMD 2210633

46.964

96.886

0.455
  pilB Vibrio campbellii strain DS40M4

45.694

98.443

0.45