Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0011c   Type   Machinery gene
Locus tag   H8R35_RS04110 Genome accession   NZ_CP084085
Coordinates   790121..790360 (+) Length   79 a.a.
NCBI ID   WP_255020618.1    Uniprot ID   -
Organism   Campylobacter jejuni strain MS2167     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 785121..795360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R35_RS04090 (H8R35_000685) - 785846..787072 (+) 1227 WP_002855588.1 HD domain-containing protein -
  H8R35_RS04095 - 787164..787560 (+) 397 Protein_793 DUF1440 domain-containing protein -
  H8R35_RS04100 (H8R35_000687) ilvD 787572..789248 (-) 1677 WP_002872310.1 dihydroxy-acid dehydratase -
  H8R35_RS04105 rrc 789408..790056 (+) 649 Protein_795 ferritin family protein -
  H8R35_RS04110 (H8R35_000688) Cj0011c 790121..790360 (+) 240 WP_255020618.1 ComEA family DNA-binding protein Machinery gene
  H8R35_RS04115 rnhB 790393..790968 (+) 576 WP_002853153.1 ribonuclease HII -
  H8R35_RS04120 (H8R35_000689) gltD 790969..792414 (-) 1446 WP_255020619.1 glutamate synthase subunit beta -
  H8R35_RS04125 (H8R35_000690) - 792430..794121 (-) 1692 WP_002870067.1 DUF262 domain-containing protein -

Sequence

Protein


Download         Length: 79 a.a.        Molecular weight: 8766.41 Da        Isoelectric Point: 10.3420

>NTDB_id=609471 H8R35_RS04110 WP_255020618.1 790121..790360(+) (Cj0011c) [Campylobacter jejuni strain MS2167]
MKKLLFLFFALTAFLFGAVNINTATLKELKSLNGIGEAKAKAILEYRKEANFTSIDDLKKVKGIGDKLFGKIKNDITVE

Nucleotide


Download         Length: 240 bp        

>NTDB_id=609471 H8R35_RS04110 WP_255020618.1 790121..790360(+) (Cj0011c) [Campylobacter jejuni strain MS2167]
ATGAAAAAATTACTATTTTTATTTTTTGCTTTAACGGCTTTTCTCTTTGGTGCTGTAAATATCAACACTGCAACGCTAAA
AGAATTAAAAAGTTTAAATGGTATTGGCGAAGCTAAGGCTAAAGCGATTTTAGAATACCGTAAAGAAGCAAATTTTACAA
GTATTGATGATCTTAAAAAAGTTAAAGGCATAGGTGATAAGCTTTTTGGAAAAATCAAAAATGATATCACAGTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(18-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.468

100

0.975
  comE Neisseria gonorrhoeae MS11

53.086

100

0.544
  comE Neisseria gonorrhoeae MS11

53.086

100

0.544
  comE Neisseria gonorrhoeae MS11

53.086

100

0.544
  comE Neisseria gonorrhoeae MS11

53.086

100

0.544
  comEA Bacillus subtilis subsp. subtilis str. 168

57.377

77.215

0.443
  comEA Staphylococcus aureus MW2

55.738

77.215

0.43
  comEA Staphylococcus aureus N315

55.738

77.215

0.43
  comEA Acinetobacter baylyi ADP1

54.098

77.215

0.418
  comEA Vibrio cholerae strain A1552

62.745

64.557

0.405
  comEA Vibrio cholerae C6706

62.745

64.557

0.405
  comEA Lactococcus lactis subsp. cremoris KW2

50

78.481

0.392
  comEA/celA/cilE Streptococcus pneumoniae Rx1

49.206

79.747

0.392
  comEA/celA/cilE Streptococcus pneumoniae D39

49.206

79.747

0.392
  comEA/celA/cilE Streptococcus pneumoniae R6

49.206

79.747

0.392
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

49.206

79.747

0.392
  comEA/celA/cilE Streptococcus mitis NCTC 12261

49.206

79.747

0.392
  comEA/celA/cilE Streptococcus mitis SK321

47.619

79.747

0.38
  comE1/comEA Haemophilus influenzae Rd KW20

49.153

74.684

0.367
  comEA Acinetobacter baumannii D1279779

46.032

79.747

0.367
  comEA/comE1 Glaesserella parasuis strain SC1401

46.032

79.747

0.367
  comEA Vibrio campbellii strain DS40M4

48.333

75.949

0.367