Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0011c   Type   Machinery gene
Locus tag   H8R36_RS01030 Genome accession   NZ_CP084084
Coordinates   178014..178253 (-) Length   79 a.a.
NCBI ID   WP_254971798.1    Uniprot ID   -
Organism   Campylobacter jejuni strain MS2074     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 173014..183253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R36_RS01020 (H8R36_000165) gltD 175960..177405 (+) 1446 WP_002857686.1 glutamate synthase subunit beta -
  H8R36_RS01025 rnhB 177406..177981 (-) 576 WP_002857688.1 ribonuclease HII -
  H8R36_RS01030 (H8R36_000166) Cj0011c 178014..178253 (-) 240 WP_254971798.1 ComEA family DNA-binding protein Machinery gene
  H8R36_RS01035 (H8R36_000167) rrc 178318..178965 (-) 648 WP_002853081.1 ferritin family protein -
  H8R36_RS01040 (H8R36_000168) ilvD 179125..180801 (+) 1677 WP_002857690.1 dihydroxy-acid dehydratase -
  H8R36_RS01045 (H8R36_000169) - 180813..181337 (-) 525 WP_002857701.1 YagU family protein -
  H8R36_RS01050 (H8R36_000170) - 181429..182655 (-) 1227 WP_002853125.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 79 a.a.        Molecular weight: 8818.49 Da        Isoelectric Point: 10.1677

>NTDB_id=609440 H8R36_RS01030 WP_254971798.1 178014..178253(-) (Cj0011c) [Campylobacter jejuni strain MS2074]
MKKLLFLFFALTAFLFGAVNINTATLKELKSLNGIGEAKAKAILEYRKEANFTSIDDLKKVKGIGDKLLEKIKNDITIE

Nucleotide


Download         Length: 240 bp        

>NTDB_id=609440 H8R36_RS01030 WP_254971798.1 178014..178253(-) (Cj0011c) [Campylobacter jejuni strain MS2074]
ATGAAAAAATTACTATTTTTATTTTTTGCTTTAACGGCTTTTCTCTTTGGTGCTGTAAATATCAACACTGCAACACTAAA
AGAATTAAAAAGTTTAAATGGTATTGGCGAAGCTAAGGCTAAAGCGATTTTAGAATACCGCAAAGAAGCAAATTTTACAA
GTATTGATGATCTTAAAAAAGTTAAAGGCATAGGTGATAAGCTTTTGGAAAAAATCAAAAATGATATCACAATAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(18-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.734

100

0.987
  comE Neisseria gonorrhoeae MS11

53.086

100

0.544
  comE Neisseria gonorrhoeae MS11

53.086

100

0.544
  comE Neisseria gonorrhoeae MS11

53.086

100

0.544
  comE Neisseria gonorrhoeae MS11

53.086

100

0.544
  comEA Acinetobacter baylyi ADP1

57.377

77.215

0.443
  comEA Bacillus subtilis subsp. subtilis str. 168

55.738

77.215

0.43
  comEA Staphylococcus aureus MW2

55.738

77.215

0.43
  comEA Staphylococcus aureus N315

55.738

77.215

0.43
  comEA Lactococcus lactis subsp. cremoris KW2

54.839

78.481

0.43
  comEA/comE1 Glaesserella parasuis strain SC1401

50.794

79.747

0.405
  comEA Vibrio cholerae strain A1552

62.745

64.557

0.405
  comEA Vibrio cholerae C6706

62.745

64.557

0.405
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

49.206

79.747

0.392
  comEA/celA/cilE Streptococcus pneumoniae Rx1

49.206

79.747

0.392
  comEA/celA/cilE Streptococcus pneumoniae D39

49.206

79.747

0.392
  comEA/celA/cilE Streptococcus pneumoniae R6

49.206

79.747

0.392
  comEA/celA/cilE Streptococcus mitis NCTC 12261

49.206

79.747

0.392
  comE1/comEA Haemophilus influenzae Rd KW20

52.542

74.684

0.392
  comEA/celA/cilE Streptococcus mitis SK321

47.619

79.747

0.38
  comEA Acinetobacter baumannii D1279779

46.032

79.747

0.367
  comEA Vibrio campbellii strain DS40M4

48.333

75.949

0.367