Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0011c   Type   Machinery gene
Locus tag   H8R33_RS04500 Genome accession   NZ_CP084080
Coordinates   853481..853720 (+) Length   79 a.a.
NCBI ID   WP_254991414.1    Uniprot ID   -
Organism   Campylobacter jejuni strain MS2005     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 848481..858720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R33_RS04480 (H8R33_000743) - 849207..850433 (+) 1227 WP_002874645.1 HD domain-containing protein -
  H8R33_RS04485 - 850525..850921 (+) 397 Protein_868 DUF1440 domain-containing protein -
  H8R33_RS04490 (H8R33_000745) ilvD 850933..852609 (-) 1677 WP_002912903.1 dihydroxy-acid dehydratase -
  H8R33_RS04495 (H8R33_000746) rrc 852769..853416 (+) 648 WP_002855562.1 ferritin family protein -
  H8R33_RS04500 (H8R33_000747) Cj0011c 853481..853720 (+) 240 WP_254991414.1 ComEA family DNA-binding protein Machinery gene
  H8R33_RS04505 rnhB 853753..854328 (+) 576 WP_002853153.1 ribonuclease HII -
  H8R33_RS04510 (H8R33_000748) gltD 854329..855774 (-) 1446 WP_002884669.1 glutamate synthase subunit beta -
  H8R33_RS04515 (H8R33_000749) - 855790..857481 (-) 1692 WP_002870067.1 DUF262 domain-containing protein -

Sequence

Protein


Download         Length: 79 a.a.        Molecular weight: 8780.44 Da        Isoelectric Point: 10.3420

>NTDB_id=609393 H8R33_RS04500 WP_254991414.1 853481..853720(+) (Cj0011c) [Campylobacter jejuni strain MS2005]
MKKLLFLFFALTAFLFGAVNINTATLKELKSLNGIGEAKAKAILEYRKEANFTSIDDLKKVKGIGDKLFGKIKNDITIE

Nucleotide


Download         Length: 240 bp        

>NTDB_id=609393 H8R33_RS04500 WP_254991414.1 853481..853720(+) (Cj0011c) [Campylobacter jejuni strain MS2005]
ATGAAAAAATTACTATTTTTATTTTTTGCTTTAACGGCTTTTCTCTTTGGTGCTGTAAATATCAACACTGCAACACTAAA
AGAATTAAAAAGTTTAAATGGTATTGGCGAAGCTAAGGCTAAAGCGATTTTAGAATACCGCAAAGAAGCAAATTTTACAA
GTATTGATGATCTTAAAAAAGTTAAAGGCATAGGTGATAAGCTTTTTGGAAAAATCAAAAATGATATCACAATAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(18-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.734

100

0.987
  comE Neisseria gonorrhoeae MS11

51.852

100

0.532
  comE Neisseria gonorrhoeae MS11

51.852

100

0.532
  comE Neisseria gonorrhoeae MS11

51.852

100

0.532
  comE Neisseria gonorrhoeae MS11

51.852

100

0.532
  comEA Staphylococcus aureus N315

57.377

77.215

0.443
  comEA Staphylococcus aureus MW2

57.377

77.215

0.443
  comEA Acinetobacter baylyi ADP1

55.738

77.215

0.43
  comEA Bacillus subtilis subsp. subtilis str. 168

55.738

77.215

0.43
  comEA Lactococcus lactis subsp. cremoris KW2

51.613

78.481

0.405
  comEA Vibrio cholerae C6706

62.745

64.557

0.405
  comEA Vibrio cholerae strain A1552

62.745

64.557

0.405
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

47.619

79.747

0.38
  comEA/celA/cilE Streptococcus pneumoniae Rx1

47.619

79.747

0.38
  comEA/celA/cilE Streptococcus pneumoniae D39

47.619

79.747

0.38
  comEA/celA/cilE Streptococcus pneumoniae R6

47.619

79.747

0.38
  comEA/celA/cilE Streptococcus mitis NCTC 12261

47.619

79.747

0.38
  comEA/comE1 Glaesserella parasuis strain SC1401

47.619

79.747

0.38
  comE1/comEA Haemophilus influenzae Rd KW20

49.153

74.684

0.367
  comEA Acinetobacter baumannii D1279779

46.032

79.747

0.367
  comEA/celA/cilE Streptococcus mitis SK321

46.032

79.747

0.367
  comEA Vibrio campbellii strain DS40M4

48.333

75.949

0.367