Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   F8A90_RS03705 Genome accession   NZ_CP044522
Coordinates   866086..866523 (+) Length   145 a.a.
NCBI ID   WP_200019036.1    Uniprot ID   -
Organism   Cobetia sp. cqz5-12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 861086..871523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8A90_RS03690 (F8A90_03690) pilD 861409..862269 (-) 861 WP_200019030.1 A24 family peptidase Machinery gene
  F8A90_RS03695 (F8A90_03695) pilC 862360..863598 (-) 1239 WP_200019032.1 type II secretion system F family protein Machinery gene
  F8A90_RS03700 (F8A90_03700) pilB 863776..865512 (-) 1737 WP_200019034.1 type IV-A pilus assembly ATPase PilB Machinery gene
  F8A90_RS03705 (F8A90_03705) comP 866086..866523 (+) 438 WP_200019036.1 pilin Machinery gene
  F8A90_RS03710 (F8A90_03710) - 866594..868360 (+) 1767 WP_200019038.1 hypothetical protein -
  F8A90_RS03715 (F8A90_03715) - 868411..868713 (-) 303 WP_043332474.1 hypothetical protein -
  F8A90_RS03720 (F8A90_03720) - 868884..870182 (-) 1299 WP_200019040.1 cation diffusion facilitator family transporter -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 14894.67 Da        Isoelectric Point: 4.1132

>NTDB_id=390820 F8A90_RS03705 WP_200019036.1 866086..866523(+) (comP) [Cobetia sp. cqz5-12]
MTRKQQAGFTLIELMIVIAIIGILAAIAIPRYQDYTKRANVSEGLQLAAAAKTAVTEVYSTSSSFPTSNAAAGLQDADTI
TGNAVDSVTVGDLGVITVNYNSTVDDGAEITLTPSAASGGSITWSCGKNATMDDAWVPADCRSGS

Nucleotide


Download         Length: 438 bp        

>NTDB_id=390820 F8A90_RS03705 WP_200019036.1 866086..866523(+) (comP) [Cobetia sp. cqz5-12]
ATGACACGCAAGCAACAAGCTGGTTTTACACTTATCGAGCTGATGATCGTTATTGCCATCATTGGTATTTTGGCTGCTAT
AGCAATCCCGCGTTACCAGGATTATACTAAGCGTGCTAATGTCTCTGAAGGTTTGCAGTTGGCAGCAGCTGCCAAAACTG
CAGTTACAGAAGTGTATTCTACTTCTAGTAGCTTCCCTACTTCTAATGCAGCGGCAGGCTTACAGGATGCTGATACCATT
ACAGGTAATGCGGTTGATTCTGTGACAGTAGGGGATCTTGGTGTTATTACAGTGAACTACAACAGCACCGTAGATGACGG
CGCGGAGATTACTCTCACTCCTTCCGCTGCATCTGGTGGCAGTATTACTTGGAGTTGTGGTAAAAATGCAACCATGGATG
ATGCATGGGTGCCTGCAGACTGTCGTTCTGGTTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-28)

Pilin (bacterial filament) (Pilin)

(38-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

47.973

100

0.49
  pilA Ralstonia pseudosolanacearum GMI1000

40.23

100

0.483
  pilA2 Legionella pneumophila strain ERS1305867

50

95.172

0.476
  pilA2 Legionella pneumophila str. Paris

50

95.172

0.476
  pilE Neisseria gonorrhoeae strain FA1090

41.875

100

0.462
  pilE Neisseria gonorrhoeae MS11

45.517

100

0.455
  pilA/pilA1 Eikenella corrodens VA1

42.484

100

0.448
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

39.333

100

0.407
  pilA Vibrio cholerae strain A1552

39.333

100

0.407
  pilA Vibrio cholerae C6706

39.333

100

0.407
  pilA Haemophilus influenzae 86-028NP

42.647

93.793

0.4
  pilA Haemophilus influenzae Rd KW20

41.912

93.793

0.393
  pilA Vibrio parahaemolyticus RIMD 2210633

39.706

93.793

0.372
  pilA Pseudomonas aeruginosa PAK

35.526

100

0.372
  pilA/pilAI Pseudomonas stutzeri DSM 10701

36.806

99.31

0.366
  pilA Vibrio campbellii strain DS40M4

38.406

95.172

0.366

Multiple sequence alignment