Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   F8A90_RS03690 Genome accession   NZ_CP044522
Coordinates   861409..862269 (-) Length   286 a.a.
NCBI ID   WP_200019030.1    Uniprot ID   -
Organism   Cobetia sp. cqz5-12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 856409..867269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8A90_RS03670 (F8A90_03670) argJ 858076..859299 (+) 1224 WP_200019024.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  F8A90_RS03675 (F8A90_03675) - 859407..860360 (+) 954 WP_200019026.1 Nudix family hydrolase -
  F8A90_RS03680 (F8A90_03680) yacG 860524..860769 (-) 246 WP_043332481.1 DNA gyrase inhibitor YacG -
  F8A90_RS03685 (F8A90_03685) coaE 860762..861412 (-) 651 WP_200019028.1 dephospho-CoA kinase -
  F8A90_RS03690 (F8A90_03690) pilD 861409..862269 (-) 861 WP_200019030.1 A24 family peptidase Machinery gene
  F8A90_RS03695 (F8A90_03695) pilC 862360..863598 (-) 1239 WP_200019032.1 type II secretion system F family protein Machinery gene
  F8A90_RS03700 (F8A90_03700) pilB 863776..865512 (-) 1737 WP_200019034.1 type IV-A pilus assembly ATPase PilB Machinery gene
  F8A90_RS03705 (F8A90_03705) comP 866086..866523 (+) 438 WP_200019036.1 pilin Machinery gene

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31169.45 Da        Isoelectric Point: 8.2191

>NTDB_id=390817 F8A90_RS03690 WP_200019030.1 861409..862269(-) (pilD) [Cobetia sp. cqz5-12]
MESLAQLSPTLLACLAGIFGLLIGSFLNVVITRLPVMMMRQWRAEAREALELEAEDTPRFNLLVPASRCPGCDTPIKWHD
NLPILGWLKRRGRCASCNTRISAQYPLVELAGGALGASIALIYGLETQSLWIFGACLTLLVLSVIDFRTQLLPDAITLPL
LWAGLAYQLLFQPLMLPSAVIGAMAGYLVLWSFYWLFKLITGKEGMGYGDFKLLAALGAWLGWQWLPLLLILSAGLGAVL
GILLQLLVPRLRGAPMPFGPYLAVAGWIALLFGTPLMSLYLSVIGA

Nucleotide


Download         Length: 861 bp        

>NTDB_id=390817 F8A90_RS03690 WP_200019030.1 861409..862269(-) (pilD) [Cobetia sp. cqz5-12]
GTGGAATCACTCGCCCAACTCTCCCCCACACTGCTAGCCTGCCTGGCCGGTATATTCGGTTTGCTGATCGGCAGCTTTCT
GAATGTCGTCATCACTCGCCTGCCCGTGATGATGATGCGTCAATGGCGCGCCGAGGCCCGCGAGGCATTGGAGCTGGAAG
CCGAAGATACACCGCGCTTCAATCTGCTGGTGCCCGCATCACGCTGCCCGGGCTGTGACACGCCAATCAAGTGGCACGAT
AACCTCCCCATTCTCGGCTGGCTGAAACGGCGTGGTCGCTGCGCCAGCTGCAATACGCGTATCAGCGCGCAGTATCCGCT
GGTGGAACTTGCCGGTGGCGCGCTCGGCGCTTCCATCGCGTTGATCTACGGCCTGGAGACACAGAGCCTGTGGATCTTCG
GTGCCTGTCTGACCCTGCTGGTGCTGTCAGTCATCGACTTCCGCACCCAGTTGCTGCCAGATGCCATCACCCTGCCACTA
CTGTGGGCAGGCCTTGCTTATCAGTTGCTGTTCCAGCCTTTGATGCTGCCCAGTGCCGTTATCGGCGCGATGGCGGGCTA
TCTGGTGCTGTGGAGCTTCTACTGGCTATTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTACGGTGACTTCAAGCTGC
TCGCCGCGCTGGGTGCCTGGCTCGGCTGGCAGTGGTTGCCGCTGTTGCTGATTCTGTCCGCCGGTCTCGGGGCCGTTCTG
GGCATCCTGCTGCAACTGCTGGTACCGCGTCTGCGCGGCGCACCGATGCCCTTCGGCCCTTACCTGGCGGTTGCCGGCTG
GATTGCTCTGCTGTTTGGCACGCCCTTGATGAGCCTCTACCTGAGCGTGATCGGCGCATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(136-242)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

51.568

100

0.517
  pilD Vibrio campbellii strain DS40M4

46.809

98.601

0.462
  pilD Acinetobacter baumannii D1279779

47.464

96.503

0.458
  pilD Acinetobacter nosocomialis M2

47.101

96.503

0.455
  pilD Neisseria gonorrhoeae MS11

47.407

94.406

0.448

Multiple sequence alignment