Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | F8A90_RS03695 | Genome accession | NZ_CP044522 |
| Coordinates | 862360..863598 (-) | Length | 412 a.a. |
| NCBI ID | WP_200019032.1 | Uniprot ID | - |
| Organism | Cobetia sp. cqz5-12 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 857360..868598
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F8A90_RS03670 (F8A90_03670) | argJ | 858076..859299 (+) | 1224 | WP_200019024.1 | bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ | - |
| F8A90_RS03675 (F8A90_03675) | - | 859407..860360 (+) | 954 | WP_200019026.1 | Nudix family hydrolase | - |
| F8A90_RS03680 (F8A90_03680) | yacG | 860524..860769 (-) | 246 | WP_043332481.1 | DNA gyrase inhibitor YacG | - |
| F8A90_RS03685 (F8A90_03685) | coaE | 860762..861412 (-) | 651 | WP_200019028.1 | dephospho-CoA kinase | - |
| F8A90_RS03690 (F8A90_03690) | pilD | 861409..862269 (-) | 861 | WP_200019030.1 | A24 family peptidase | Machinery gene |
| F8A90_RS03695 (F8A90_03695) | pilC | 862360..863598 (-) | 1239 | WP_200019032.1 | type II secretion system F family protein | Machinery gene |
| F8A90_RS03700 (F8A90_03700) | pilB | 863776..865512 (-) | 1737 | WP_200019034.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| F8A90_RS03705 (F8A90_03705) | comP | 866086..866523 (+) | 438 | WP_200019036.1 | pilin | Machinery gene |
| F8A90_RS03710 (F8A90_03710) | - | 866594..868360 (+) | 1767 | WP_200019038.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 412 a.a. Molecular weight: 44826.25 Da Isoelectric Point: 9.7590
>NTDB_id=390818 F8A90_RS03695 WP_200019032.1 862360..863598(-) (pilC) [Cobetia sp. cqz5-12]
MATPRTAKKDKKKAGIETWQWSGKNSRGENVKGELMSANVDQVKNTLVSQGIVLKRLRKKSSLFGGSKKVSGKDVTMFAR
QMATMIRAGVPVLQAFGIVAESMKSPGMRHLVEDMMNQVGAGASFSEALRKHPQHFDNLFANLVEAGEQAGALDKMLDRV
ATYKEKIDSLKARVKKALYYPIAVIGVGIGVTAILLIKVVPQFETLFQGFGAELPAFTQLTINLSEYAQNYWYVALGIVV
LTGMLIAQGMKRSEKFAYGCHRFMLKVPVLGDILDKSSVARYSRTLATTFQAGVPLVESLDTAAGASGNKVYERAIAQIK
EDVSTGQQLNFAMRNTQLFPTLAVQMVAIGEESGSLDAMLNKVADFYEEDVDNKVDALTSLLEPLIIVVLGTLVGGLVVS
MYLPIFELGNAI
MATPRTAKKDKKKAGIETWQWSGKNSRGENVKGELMSANVDQVKNTLVSQGIVLKRLRKKSSLFGGSKKVSGKDVTMFAR
QMATMIRAGVPVLQAFGIVAESMKSPGMRHLVEDMMNQVGAGASFSEALRKHPQHFDNLFANLVEAGEQAGALDKMLDRV
ATYKEKIDSLKARVKKALYYPIAVIGVGIGVTAILLIKVVPQFETLFQGFGAELPAFTQLTINLSEYAQNYWYVALGIVV
LTGMLIAQGMKRSEKFAYGCHRFMLKVPVLGDILDKSSVARYSRTLATTFQAGVPLVESLDTAAGASGNKVYERAIAQIK
EDVSTGQQLNFAMRNTQLFPTLAVQMVAIGEESGSLDAMLNKVADFYEEDVDNKVDALTSLLEPLIIVVLGTLVGGLVVS
MYLPIFELGNAI
Nucleotide
Download Length: 1239 bp
>NTDB_id=390818 F8A90_RS03695 WP_200019032.1 862360..863598(-) (pilC) [Cobetia sp. cqz5-12]
ATGGCAACTCCCAGAACTGCCAAGAAAGACAAGAAAAAAGCGGGCATTGAAACTTGGCAATGGTCGGGCAAGAACTCGCG
TGGCGAAAACGTCAAGGGCGAGCTGATGTCGGCCAACGTCGATCAGGTCAAGAACACGCTGGTCAGCCAGGGAATCGTGC
TCAAGCGCCTGCGCAAGAAGTCCTCCCTGTTTGGTGGTAGCAAGAAGGTCAGCGGCAAGGATGTCACCATGTTCGCCCGT
CAGATGGCGACCATGATCCGTGCTGGCGTACCGGTACTTCAGGCATTCGGCATCGTGGCTGAAAGCATGAAGAGTCCAGG
TATGCGTCATCTGGTCGAAGACATGATGAATCAGGTGGGAGCAGGCGCCAGTTTTTCGGAAGCCTTGCGCAAACACCCCC
AGCATTTTGATAACCTGTTTGCCAATCTTGTCGAAGCCGGCGAACAAGCTGGCGCCCTGGATAAGATGCTCGATCGTGTC
GCGACGTATAAAGAAAAGATTGATTCCCTCAAGGCGCGCGTCAAGAAAGCCCTTTATTACCCTATCGCCGTGATCGGCGT
CGGGATCGGGGTAACAGCTATTCTGTTGATCAAGGTAGTTCCACAATTTGAAACTCTTTTTCAAGGCTTTGGCGCAGAAC
TCCCAGCATTTACTCAATTGACTATTAATCTGTCTGAGTACGCTCAAAACTACTGGTATGTAGCCCTTGGCATAGTAGTG
CTTACTGGAATGCTTATTGCTCAAGGCATGAAACGATCTGAAAAATTTGCTTATGGCTGTCACCGCTTCATGCTCAAGGT
ACCTGTGCTCGGCGATATTCTGGATAAATCGTCTGTCGCTCGTTATTCACGTACATTGGCTACGACCTTCCAGGCAGGTG
TTCCGTTAGTGGAATCGCTTGATACTGCCGCCGGCGCCTCAGGCAACAAGGTCTACGAGCGCGCCATTGCCCAGATCAAG
GAAGATGTCTCTACCGGCCAGCAGCTGAACTTCGCCATGCGCAATACCCAGCTGTTTCCGACACTGGCGGTACAGATGGT
GGCAATTGGCGAGGAATCCGGCTCACTGGATGCCATGCTCAACAAGGTCGCCGACTTCTATGAAGAAGACGTCGACAACA
AGGTAGATGCGCTGACCTCATTGCTGGAGCCCTTGATCATCGTGGTGCTAGGCACCCTGGTGGGCGGGCTTGTGGTCTCG
ATGTATCTACCCATCTTCGAGCTGGGCAACGCGATCTAG
ATGGCAACTCCCAGAACTGCCAAGAAAGACAAGAAAAAAGCGGGCATTGAAACTTGGCAATGGTCGGGCAAGAACTCGCG
TGGCGAAAACGTCAAGGGCGAGCTGATGTCGGCCAACGTCGATCAGGTCAAGAACACGCTGGTCAGCCAGGGAATCGTGC
TCAAGCGCCTGCGCAAGAAGTCCTCCCTGTTTGGTGGTAGCAAGAAGGTCAGCGGCAAGGATGTCACCATGTTCGCCCGT
CAGATGGCGACCATGATCCGTGCTGGCGTACCGGTACTTCAGGCATTCGGCATCGTGGCTGAAAGCATGAAGAGTCCAGG
TATGCGTCATCTGGTCGAAGACATGATGAATCAGGTGGGAGCAGGCGCCAGTTTTTCGGAAGCCTTGCGCAAACACCCCC
AGCATTTTGATAACCTGTTTGCCAATCTTGTCGAAGCCGGCGAACAAGCTGGCGCCCTGGATAAGATGCTCGATCGTGTC
GCGACGTATAAAGAAAAGATTGATTCCCTCAAGGCGCGCGTCAAGAAAGCCCTTTATTACCCTATCGCCGTGATCGGCGT
CGGGATCGGGGTAACAGCTATTCTGTTGATCAAGGTAGTTCCACAATTTGAAACTCTTTTTCAAGGCTTTGGCGCAGAAC
TCCCAGCATTTACTCAATTGACTATTAATCTGTCTGAGTACGCTCAAAACTACTGGTATGTAGCCCTTGGCATAGTAGTG
CTTACTGGAATGCTTATTGCTCAAGGCATGAAACGATCTGAAAAATTTGCTTATGGCTGTCACCGCTTCATGCTCAAGGT
ACCTGTGCTCGGCGATATTCTGGATAAATCGTCTGTCGCTCGTTATTCACGTACATTGGCTACGACCTTCCAGGCAGGTG
TTCCGTTAGTGGAATCGCTTGATACTGCCGCCGGCGCCTCAGGCAACAAGGTCTACGAGCGCGCCATTGCCCAGATCAAG
GAAGATGTCTCTACCGGCCAGCAGCTGAACTTCGCCATGCGCAATACCCAGCTGTTTCCGACACTGGCGGTACAGATGGT
GGCAATTGGCGAGGAATCCGGCTCACTGGATGCCATGCTCAACAAGGTCGCCGACTTCTATGAAGAAGACGTCGACAACA
AGGTAGATGCGCTGACCTCATTGCTGGAGCCCTTGATCATCGTGGTGCTAGGCACCCTGGTGGGCGGGCTTGTGGTCTCG
ATGTATCTACCCATCTTCGAGCTGGGCAACGCGATCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
57.468 |
95.874 |
0.551 |
| pilC | Acinetobacter baylyi ADP1 |
52.696 |
99.029 |
0.522 |
| pilC | Acinetobacter baumannii D1279779 |
52.099 |
98.301 |
0.512 |
| pilC | Legionella pneumophila strain ERS1305867 |
51.351 |
98.786 |
0.507 |
| pilC | Vibrio campbellii strain DS40M4 |
44.724 |
96.602 |
0.432 |
| pilC | Vibrio cholerae strain A1552 |
44.836 |
96.359 |
0.432 |
| pilG | Neisseria gonorrhoeae MS11 |
42.579 |
99.757 |
0.425 |
| pilG | Neisseria meningitidis 44/76-A |
41.99 |
100 |
0.42 |