Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   F0T10_RS13185 Genome accession   NZ_CP043871
Coordinates   2104946..2105200 (-) Length   84 a.a.
NCBI ID   WP_164823284.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NG196     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2099946..2110200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0T10_RS11005 (F0T10_12325) - 2100822..2101697 (-) 876 WP_003686971.1 NUDIX hydrolase -
  F0T10_RS11015 (F0T10_12340) thiC 2102295..2104196 (+) 1902 WP_047918965.1 phosphomethylpyrimidine synthase ThiC -
  F0T10_RS12755 (F0T10_12345) pilE 2104684..2105022 (-) 339 WP_419692559.1 pilin Machinery gene
  F0T10_RS13185 pilE 2104946..2105200 (-) 255 WP_164823284.1 pilin Machinery gene
  F0T10_RS11030 (F0T10_12360) - 2106058..2106459 (-) 402 Protein_2134 pilin -
  F0T10_RS11035 (F0T10_12365) lpxC 2106587..2107510 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  F0T10_RS11040 (F0T10_12370) - 2107996..2108166 (-) 171 Protein_2136 pilin -
  F0T10_RS11045 - 2108329..2108682 (-) 354 Protein_2137 pilin -
  F0T10_RS12765 - 2108701..2109021 (-) 321 Protein_2138 pilin -
  F0T10_RS11050 (F0T10_12380) - 2109051..2109335 (-) 285 Protein_2139 pilin -

Sequence

Protein


Download         Length: 84 a.a.        Molecular weight: 9144.58 Da        Isoelectric Point: 7.1609

>NTDB_id=386366 F0T10_RS13185 WP_164823284.1 2104946..2105200(-) (pilE) [Neisseria gonorrhoeae strain NG196]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGTWPKDNTSAGVASPLRHQ
RQIC

Nucleotide


Download         Length: 255 bp        

>NTDB_id=386366 F0T10_RS13185 WP_164823284.1 2104946..2105200(-) (pilE) [Neisseria gonorrhoeae strain NG196]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCTATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCCGCCTACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCTGAATCACGGCACATGGCCGAAAGACAACACTTCTGCCGGCGTGGCATCCCCCCTCCGACATCAA
AGGCAAATATGTTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Pilin (bacterial filament) (Pilin)

(36-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

98.667

89.286

0.881
  pilE Neisseria gonorrhoeae MS11

96.053

90.476

0.869
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

66.129

73.81

0.488
  pilA2 Legionella pneumophila strain ERS1305867

56.944

85.714

0.488
  pilA2 Legionella pneumophila str. Paris

56.944

85.714

0.488
  comP Acinetobacter baylyi ADP1

67.241

69.048

0.464
  pilA Ralstonia pseudosolanacearum GMI1000

66.667

67.857

0.452
  pilA/pilA1 Eikenella corrodens VA1

56.061

78.571

0.44
  pilA/pilAI Pseudomonas stutzeri DSM 10701

58.73

75

0.44
  pilA Acinetobacter nosocomialis M2

68

59.524

0.405
  pilA Pseudomonas aeruginosa PAK

48.571

83.333

0.405
  pilA Acinetobacter baumannii strain A118

58.929

66.667

0.393
  pilA Glaesserella parasuis strain SC1401

46.377

82.143

0.381
  pilA Vibrio campbellii strain DS40M4

64

59.524

0.381
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

39.744

92.857

0.369
  pilA Vibrio cholerae C6706

39.744

92.857

0.369
  pilA Vibrio cholerae strain A1552

39.744

92.857

0.369
  pilA/pilAII Pseudomonas stutzeri DSM 10701

51.667

71.429

0.369

Multiple sequence alignment