Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   F0T10_RS12755 Genome accession   NZ_CP043871
Coordinates   2104684..2105022 (-) Length   112 a.a.
NCBI ID   WP_419692559.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NG196     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2099684..2110022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0T10_RS11000 (F0T10_12320) - 2099872..2100813 (-) 942 WP_003686969.1 ABC transporter ATP-binding protein -
  F0T10_RS11005 (F0T10_12325) - 2100822..2101697 (-) 876 WP_003686971.1 NUDIX hydrolase -
  F0T10_RS11015 (F0T10_12340) thiC 2102295..2104196 (+) 1902 WP_047918965.1 phosphomethylpyrimidine synthase ThiC -
  F0T10_RS12755 (F0T10_12345) pilE 2104684..2105022 (-) 339 WP_419692559.1 pilin Machinery gene
  F0T10_RS13185 pilE 2104946..2105200 (-) 255 WP_164823284.1 pilin Machinery gene
  F0T10_RS11030 (F0T10_12360) - 2106058..2106459 (-) 402 Protein_2134 pilin -
  F0T10_RS11035 (F0T10_12365) lpxC 2106587..2107510 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  F0T10_RS11040 (F0T10_12370) - 2107996..2108166 (-) 171 Protein_2136 pilin -
  F0T10_RS11045 - 2108329..2108682 (-) 354 Protein_2137 pilin -
  F0T10_RS12765 - 2108701..2109021 (-) 321 Protein_2138 pilin -
  F0T10_RS11050 (F0T10_12380) - 2109051..2109335 (-) 285 Protein_2139 pilin -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 11981.63 Da        Isoelectric Point: 10.3846

>NTDB_id=386365 F0T10_RS12755 WP_419692559.1 2104684..2105022(-) (pilE) [Neisseria gonorrhoeae strain NG196]
MTAHGRKTTLLPAWHPPSDIKGKYVESVTVTNGVVTAKMLSSGVNKEIQGKRLSLWAKRQAGSVKWFCGQPVQRAADAAK
AGTDADAVTADANNAIDTKHLPSTCRDKHDAK

Nucleotide


Download         Length: 339 bp        

>NTDB_id=386365 F0T10_RS12755 WP_419692559.1 2104684..2105022(-) (pilE) [Neisseria gonorrhoeae strain NG196]
ATCACGGCACATGGCCGAAAGACAACACTTCTGCCGGCGTGGCATCCCCCCTCCGACATCAAAGGCAAATATGTTGAAAG
CGTTACGGTCACAAACGGCGTCGTTACCGCCAAAATGCTTTCAAGCGGCGTAAACAAAGAAATCCAAGGCAAAAGACTCT
CCCTGTGGGCCAAGCGTCAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTCAGCGCGCCGCCGACGCCGCCAAA
GCCGGCACCGACGCCGACGCCGTCACCGCCGACGCCAACAACGCCATCGACACCAAGCACCTGCCGTCAACCTGCCGCGA
TAAACATGATGCCAAATGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(12-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

68

89.286

0.607
  pilE Neisseria gonorrhoeae strain FA1090

69.149

83.929

0.58

Multiple sequence alignment