Detailed information NTG0035724

Bioinformatically predicted

Overview

• Name: Cj0011c
• Type: Machinery gene
• Locus tag: SDEL_RS08480
• Genome accession: NC_013512
• Coordinates: 1696954..1697196 (-)
• Length: 80 a.a.
• NCBI ID: WP_012857443.1
• Uniprot ID: D1B3M3
• Organism: Sulfurospirillum deleyianum DSM 6946
• Function: DNA binding (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1691954..1702196

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SDEL_RS08480 (Sdel_1678)	Cj0011c	1696954..1697196 (-)	243	WP_012857443.1	helix-hairpin-helix domain-containing protein	Machinery gene

Sequence

Protein

• Length: 80 a.a.
• Molecular weight: 8969.63 Da
• Isoelectric Point: 10.0541

>NTDB_id=35724 SDEL_RS08480 WP_012857443.1 1696954..1697196(-) (Cj0011c) [Sulfurospirillum deleyianum DSM 6946]
MLKFFMLFLFLVASLWAKVDINSASLSELSSLRGIGEKKAQAIVEYRTQKGKFNTIDELVHVKGIGPKILESIKSDIEVK

Nucleotide

• Length: 243 bp

>NTDB_id=35724 SDEL_RS08480 WP_012857443.1 1696954..1697196(-) (Cj0011c) [Sulfurospirillum deleyianum DSM 6946]
ATGTTAAAGTTTTTTATGCTTTTTTTATTCTTGGTAGCCTCTTTGTGGGCAAAAGTGGATATTAATAGTGCATCTTTGAG
TGAGTTAAGTTCTTTAAGAGGGATTGGTGAGAAAAAAGCTCAGGCTATTGTAGAGTACCGTACGCAAAAAGGTAAATTTA
ACACGATTGATGAATTAGTTCATGTAAAAGGAATTGGTCCTAAAATATTAGAGTCTATTAAAAGTGATATTGAGGTTAAA
TAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix motif (HHH_3) (18-77)

3D structure

• AlphaFold DB: D1B3M3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
Cj0011c	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	53.165	98.75	0.525
comE	Neisseria gonorrhoeae MS11	50.617	100	0.512
comE	Neisseria gonorrhoeae MS11	50.617	100	0.512
comE	Neisseria gonorrhoeae MS11	50.617	100	0.512
comE	Neisseria gonorrhoeae MS11	50.617	100	0.512
comEA	Acinetobacter baylyi ADP1	56.452	77.5	0.438
comEA	Acinetobacter baumannii D1279779	54.098	76.25	0.412
comEA	Acinetobacter baumannii strain A118	52.459	76.25	0.4
comEA	Staphylococcus aureus MW2	54.237	73.75	0.4
comEA	Staphylococcus aureus N315	54.237	73.75	0.4
comEA	Bacillus subtilis subsp. subtilis str. 168	50	77.5	0.388
comEA	Latilactobacillus sakei subsp. sakei 23K	49.206	78.75	0.387
comEA/comE1	Glaesserella parasuis strain SC1401	55.556	67.5	0.375
comEA	Lactococcus lactis subsp. cremoris KW2	47.619	78.75	0.375
comEA	Vibrio cholerae C6706	61.224	61.25	0.375
comEA	Vibrio cholerae strain A1552	61.224	61.25	0.375
comEA	Vibrio parahaemolyticus RIMD 2210633	59.184	61.25	0.363
comE1/comEA	Haemophilus influenzae Rd KW20	47.541	76.25	0.363
comEA/celA/cilE	Streptococcus pneumoniae D39	46.774	77.5	0.362
comEA/celA/cilE	Streptococcus pneumoniae R6	46.774	77.5	0.362
comEA/celA/cilE	Streptococcus pneumoniae TIGR4	46.774	77.5	0.362
comEA/celA/cilE	Streptococcus pneumoniae Rx1	46.774	77.5	0.362
comEA/celA/cilE	Streptococcus mitis NCTC 12261	46.774	77.5	0.362